C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000S0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100644-ENSG00000023608 CGP 9606 14:61695513-61796428
GeneTranscriptPositionBiotype
ENSG00000023608 (SNAPC1)
small nuclear RNA activating complex, polypeptide 1, 43kDa 		ENST00000216294 (SNAPC1-001) 61762357-61796428 protein_coding
ENSG00000100644 (HIF1A)
hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 		ENST00000323441 (HIF1A-002) 61695777-61748258 protein_coding
ENST00000337138 (HIF1A-001) 61695540-61748258 protein_coding
ENST00000394997 (HIF1A-003) 61695540-61748258 protein_coding
ENST00000539097 (HIF1A-201) 61697622-61748259 protein_coding
ENST00000547430 (HIF1A-010) 61740061-61740898 retained_intron
ENST00000553999 (HIF1A-005) 61695513-61726763 processed_transcript
ENST00000555014 (HIF1A-011) 61736890-61741188 processed_transcript
ENST00000556237 (HIF1A-007) 61726421-61727649 processed_transcript
ENST00000556827 (HIF1A-009) 61745605-61747472 retained_intron
ENST00000557206 (HIF1A-012) 61698895-61727632 processed_transcript
ENST00000557446 (HIF1A-008) 61695513-61721824 processed_transcript
ENST00000557538 (HIF1A-004) 61697622-61747771 protein_coding
ENSG00000258667 (HIF1A-AS2)
HIF1A antisense RNA 2 		ENST00000554254 (HIF1A-AS2-001) 61715558-61751097 lincRNA
ENSG00000258964 (RP11-618G20.1)
 ENST00000555937 (RP11-618G20.1-001) 61734138-61776260 processed_transcript
CIL_0000S0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021109-ENSMUSG00000021113 CGP 10090 12:73901375-73984820
GeneTranscriptPositionBiotype
ENSMUSG00000021109 (Hif1a)
hypoxia inducible factor 1, alpha subunit 		ENSMUST00000021530 (Hif1a-001) 73907904-73947530 protein_coding
ENSMUST00000110461 (Hif1a-003) 73901375-73947530 protein_coding
ENSMUST00000110464 (Hif1a-002) 73907904-73933076 protein_coding
ENSMUST00000149740 (Hif1a-004) 73926602-73928532 retained_intron
ENSMUST00000157041 (Hif1a-005) 73937670-73939881 processed_transcript
ENSMUSG00000021113 (Snapc1)
small nuclear RNA activating complex, polypeptide 1 		ENSMUST00000021532 (Snapc1-201) 73964530-73984820 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S0_0001ENSG00000023608ENST00000216294ENSG00000100644ENST00000323441ENST00000337138ENST00000394997ENST00000539097ENST00000547430ENST00000553999ENST00000555014ENST00000556237ENST00000556827ENST00000557206ENST00000557446ENST00000557538ENSG00000258667ENST00000554254ENSG00000258964ENST00000555937CIL_0000S0_0002ENSMUSG00000021109ENSMUST00000021530ENSMUST00000110461ENSMUST00000110464ENSMUST00000149740ENSMUST00000157041ENSMUSG00000021113ENSMUST00000021532
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000S0_0001ENSG00000023608ENST00000216294ENSG00000100644ENST00000323441ENST00000337138ENST00000394997ENST00000557538ENSG00000258667ENST00000554254ENSG00000258964ENST00000555937CIL_0000S0_0002ENSMUSG00000021109ENSMUST00000021530ENSMUST00000110461ENSMUST00000110464ENSMUST00000149740ENSMUSG00000021113ENSMUST00000021532
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000023608 ENST00000216294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.784±0.00 7.688±0.00 4.527±0.00 19.249±7.50
ENSG00000100644 ENST00000323441 N/A N/A N/A N/A N/A 5.693±0.00 N/A N/A N/A N/A N/A N/A 1.963±0.00 N/A
ENST00000337138 33.339±0.00 27.744±0.00 6.354±0.00 8.792±3.29 6.660±3.20 10.827±4.24 6.016±3.87 23.055±21.33 5.496±0.59 21.974±11.55 3.945±0.00 16.699±8.66 9.622±2.21 18.311±6.93
ENST00000394997 N/A 12.398±0.00 N/A 7.600±4.76 5.760±0.32 3.019±0.00 4.366±1.55 15.022±13.15 3.230±0.00 33.004±0.00 0.189±0.00 7.802±3.44 7.427±2.22 9.511±0.00
ENST00000539097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557538 N/A N/A 12.396±0.00 N/A 13.179±0.00 9.227±0.00 3.713±0.00 5.621±0.00 9.939±0.00 7.855±0.00 N/A 9.156±0.00 N/A N/A
ENSG00000258667 ENST00000554254 0.114±0.00 N/A N/A 0.179±0.00 0.300±0.00 0.245±0.00 2.379±0.01 N/A N/A 1.054±0.00 1.258±1.11 0.135±0.03 0.104±0.00 0.232±0.00
ENSG00000258964 ENST00000555937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.102±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021109 ENSMUST00000021530 12.999±3.20 4.616±0.99 12.202±0.13 14.853±7.16 11.320±3.22 9.878±2.81 7.359±0.75 9.170±1.20 4.147±1.42 8.734±1.02 1.811±0.55 15.800±4.84 20.150±7.95 1.894±0.56
ENSMUST00000110461 N/A N/A 6.369±0.00 3.755±0.15 3.330±0.00 N/A 1.451±0.13 N/A 1.709±0.35 N/A 1.015±0.42 10.459±0.05 12.880±4.47 0.627±0.00
ENSMUST00000110464 N/A 13.319±0.00 N/A N/A 29.875±0.96 28.821±8.54 N/A 3.901±0.00 N/A 3.333±0.00 N/A 55.367±17.80 N/A N/A
ENSMUST00000149740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 70.239±0.00 78.657±26.70 N/A
ENSMUST00000157041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021113 ENSMUST00000021532 1.104±0.25 1.799±0.86 3.965±0.06 5.615±0.53 2.224±0.37 1.468±0.82 1.339±0.78 1.460±0.48 1.559±0.79 2.136±0.57 1.980±0.36 4.102±3.61 11.465±8.68 2.662±1.18

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