C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypoxia inducible factor 1, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110461 Hif1a-003 ENSMUSG00000021109 10090 + 12:73901375-73947530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000110461
Transcript ID Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000110461 6.369±0.00 3.755±0.15 3.330±0.00 1.451±0.13 1.709±0.35 1.015±0.42 10.459±0.05 12.880±4.47 0.627±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006H CIL_00006H_0002 CGP 12:73584797-73947530
CIL_0000S0 CIL_0000S0_0002 CGP 12:73901375-73984820

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IPI RNA polymerase II transcription factor binding transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001525 IMP angiogenesis
GO:0001568 IMP blood vessel development
GO:0001666 ISS response to hypoxia
GO:0001755 IMP neural crest cell migration
GO:0001837 IMP epithelial to mesenchymal transition
GO:0001892 IGI embryonic placenta development
GO:0001922 IMP B-1 B cell homeostasis
GO:0001944 IGI vasculature development
GO:0001947 IMP heart looping
GO:0002052 IGI positive regulation of neuroblast proliferation
GO:0002248 IMP connective tissue replacement involved in inflammatory response wound healing
GO:0003151 IMP outflow tract morphogenesis
GO:0003208 IMP cardiac ventricle morphogenesis
GO:0003677 IDA DNA binding
GO:0003700 ISO sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0006089 IMP lactate metabolic process
GO:0006110 IGI regulation of glycolytic process
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006366 IPI transcription from RNA polymerase II promoter
GO:0006879 IMP cellular iron ion homeostasis
GO:0007165 IEA signal transduction
GO:0007595 IMP lactation
GO:0008542 IMP visual learning
GO:0010575 ISS positive regulation vascular endothelial growth factor production
GO:0010634 IMP positive regulation of epithelial cell migration
GO:0014850 IMP response to muscle activity
GO:0019896 ISS axon transport of mitochondrion
GO:0021502 IMP neural fold elevation formation
GO:0021987 IMP cerebral cortex development
GO:0030154 IMP cell differentiation
GO:0030502 IMP negative regulation of bone mineralization
GO:0030949 IMP positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0031514 IDA motile cilium
GO:0032007 IMP negative regulation of TOR signaling
GO:0032364 IMP oxygen homeostasis
GO:0032963 IMP collagen metabolic process
GO:0035035 ISS histone acetyltransferase binding
GO:0035162 IMP embryonic hemopoiesis
GO:0035774 IMP positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0042127 IMP regulation of cell proliferation
GO:0042541 IMP hemoglobin biosynthetic process
GO:0042593 IMP glucose homeostasis
GO:0042826 IPI histone deacetylase binding
GO:0043066 IMP negative regulation of apoptotic process
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0043619 IMP regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045648 IMP positive regulation of erythrocyte differentiation
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045926 IMP negative regulation of growth
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046716 IMP muscle cell cellular homeostasis
GO:0046982 ISS protein heterodimerization activity
GO:0048514 IMP blood vessel morphogenesis
GO:0048546 IMP digestive tract morphogenesis
GO:0050790 IMP regulation of catalytic activity
GO:0051216 IMP cartilage development
GO:0051541 IMP elastin metabolic process
GO:0060574 IMP intestinal epithelial cell maturation
GO:0061030 IMP epithelial cell differentiation involved in mammary gland alveolus development
GO:0061298 IMP retina vasculature development in camera-type eye
GO:0061419 ISS positive regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070243 IGI regulation of thymocyte apoptotic process
GO:0070244 IMP negative regulation of thymocyte apoptotic process
GO:0071456 ISS cellular response to hypoxia
GO:0071542 IGI dopaminergic neuron differentiation
GO:2001054 IMP negative regulation of mesenchymal cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323441 HIF1A-002 protein_coding Homo_sapiens 0 2614
ENST00000337138 HIF1A-001 protein_coding Homo_sapiens 0 3024
ENST00000394997 HIF1A-003 protein_coding Homo_sapiens 0 3025
ENST00000539097 HIF1A-201 protein_coding Homo_sapiens 0 3025
ENST00000553999 HIF1A-005 processed_transcript Homo_sapiens 0 383
ENST00000555014 HIF1A-011 processed_transcript Homo_sapiens 0 267
ENST00000556237 HIF1A-007 processed_transcript Homo_sapiens 0 403
ENST00000556827 HIF1A-009 retained_intron Homo_sapiens 0 411
ENST00000557206 HIF1A-012 processed_transcript Homo_sapiens 0 939
ENST00000557446 HIF1A-008 processed_transcript Homo_sapiens 0 311
ENST00000557538 HIF1A-004 protein_coding Homo_sapiens 0 3025

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