C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypoxia inducible factor 1, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149740 Hif1a-004 ENSMUSG00000021109 10090 + 12:73926602-73928532 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000149740
Transcript ID Ovary Placenta
ENSMUST00000149740 70.239±0.00 78.657±26.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006H CIL_00006H_0002 CGP 12:73584797-73947530
CIL_0000S0 CIL_0000S0_0002 CGP 12:73901375-73984820

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323441 HIF1A-002 protein_coding Homo_sapiens 0 340
ENST00000337138 HIF1A-001 protein_coding Homo_sapiens 0 340
ENST00000394997 HIF1A-003 protein_coding Homo_sapiens 0 340
ENST00000539097 HIF1A-201 protein_coding Homo_sapiens 0 340
ENST00000553999 HIF1A-005 processed_transcript Homo_sapiens 5e-39 165
ENST00000557206 HIF1A-012 processed_transcript Homo_sapiens 0 340
ENST00000557446 HIF1A-008 processed_transcript Homo_sapiens 4e-39 165
ENST00000557538 HIF1A-004 protein_coding Homo_sapiens 0 340

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