C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB34, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395242 RAB34-006 ENSG00000109113 9606 - 17:28714298-28717851 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLungMuscleOvaryTestisENST00000395242
Transcript ID Adipose Brain Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000395242 6.909±0.00 4.478±0.00 11.803±0.00 2.011±0.00 9.763±0.00 7.577±7.23 1.605±0.00 19.899±16.70 5.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DE CIL_0000DE_0002 CGP 17:28714284-28724359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108322 Rab34-003 protein_coding Mus_musculus 0 1469
ENSMUST00000056241 Rab34-008 protein_coding Mus_musculus 0 1325
ENSMUST00000002128 Rab34-001 protein_coding Mus_musculus 0 1291
ENSMUST00000150941 Rab34-002 protein_coding Mus_musculus 0 874
ENSMUST00000156435 Rab34-007 protein_coding Mus_musculus 0 520
ENSMUST00000148603 Rab34-004 retained_intron Mus_musculus 0 383
ENSMUST00000126864 Rab34-005 retained_intron Mus_musculus 0 361
ENSMUST00000154542 Rab34-006 retained_intron Mus_musculus 4e-39 167

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