C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000DE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000010977-ENSDARG00000006316 CGP 7955 21:25455939-25468127
GeneTranscriptPositionBiotype
ENSDARG00000006316 (rpl23a)
ribosomal protein L23a 		ENSDART00000003001 (rpl23a-001) 25465361-25468127 protein_coding
ENSDART00000134939 (rpl23a-003) 25465400-25467653 retained_intron
ENSDART00000141001 (rpl23a-002) 25465448-25468125 processed_transcript
ENSDART00000146573 (rpl23a-004) 25465421-25468125 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000DE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109113-ENSG00000198242 CGP 9606 17:28714284-28724359
GeneTranscriptPositionBiotype
ENSG00000109113 (RAB34)
RAB34, member RAS oncogene family 		ENST00000301043 (RAB34-001) 28714284-28718415 protein_coding
ENST00000353676 (RAB34-004) 28714873-28718222 protein_coding
ENST00000395242 (RAB34-006) 28714298-28717851 protein_coding
ENST00000395243 (RAB34-005) 28714284-28717748 protein_coding
ENST00000395245 (RAB34-018) 28714314-28717893 protein_coding
ENST00000412625 (RAB34-009) 28714873-28718429 protein_coding
ENST00000415040 (RAB34-007) 28714285-28718183 protein_coding
ENST00000419712 (RAB34-019) 28715260-28718167 protein_coding
ENST00000422279 (RAB34-014) 28714291-28717393 nonsense_mediated_decay
ENST00000430132 (RAB34-010) 28714647-28718405 protein_coding
ENST00000436730 (RAB34-003) 28714625-28718161 protein_coding
ENST00000450529 (RAB34-008) 28714285-28718165 protein_coding
ENST00000453384 (RAB34-002) 28714284-28718267 protein_coding
ENST00000474704 (RAB34-017) 28714299-28715718 retained_intron
ENST00000481501 (RAB34-013) 28715439-28716373 retained_intron
ENST00000482688 (RAB34-012) 28716756-28718167 retained_intron
ENST00000483554 (RAB34-011) 28716237-28717707 retained_intron
ENST00000484161 (RAB34-016) 28714287-28715485 retained_intron
ENST00000496866 (RAB34-015) 28714906-28715518 retained_intron
ENST00000580843 (RAB34-020) 28716053-28718167 protein_coding
ENST00000582934 (RAB34-021) 28716903-28718167 protein_coding
ENST00000583538 (RAB34-022) 28714673-28718167 protein_coding
ENSG00000198242 (RPL23A)
ribosomal protein L23a 		ENST00000355731 (RPL23A-003) 28720299-28723992 protein_coding
ENST00000394935 (RPL23A-004) 28720264-28723933 protein_coding
ENST00000394938 (RPL23A-009) 28720244-28723936 protein_coding
ENST00000422514 (RPL23A-001) 28719393-28724359 protein_coding
ENST00000472628 (RPL23A-006) 28720569-28723936 protein_coding
ENST00000496182 (RPL23A-002) 28720079-28723936 protein_coding
ENST00000578181 (RPL23A-011) 28720705-28723800 protein_coding
ENST00000580755 (RPL23A-010) 28723300-28723937 retained_intron
ENST00000582736 (RPL23A-008) 28719991-28721261 retained_intron
ENSG00000264577 (SNORD4A)
small nucleolar RNA, C/D box 4A 		ENST00000582718 (SNORD4A-001) 28721487-28722877 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DE_0001ENSDARG00000006316ENSDART00000003001ENSDART00000134939ENSDART00000141001ENSDART00000146573CIL_0000DE_0002ENSG00000109113ENST00000301043ENST00000353676ENST00000395242ENST00000395243ENST00000395245ENST00000412625ENST00000415040ENST00000419712ENST00000422279ENST00000430132ENST00000436730ENST00000450529ENST00000453384ENST00000474704ENST00000481501ENST00000482688ENST00000483554ENST00000484161ENST00000496866ENST00000580843ENST00000582934ENST00000583538ENSG00000198242ENST00000355731ENST00000394935ENST00000394938ENST00000422514ENST00000472628ENST00000496182ENST00000578181ENST00000580755ENST00000582736ENSG00000264577ENST00000582718
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000DE_0001ENSDARG00000006316ENSDART00000003001ENSDART00000134939ENSDART00000146573CIL_0000DE_0002ENSG00000109113ENST00000301043ENST00000353676ENST00000395242ENST00000395243ENST00000395245ENST00000412625ENST00000415040ENST00000419712ENST00000430132ENST00000436730ENST00000450529ENST00000474704ENST00000483554ENST00000484161ENST00000583538ENSG00000198242ENST00000355731ENST00000394935ENST00000394938ENST00000422514ENST00000472628ENST00000496182ENST00000582736ENSG00000264577ENST00000582718
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006316 ENSDART00000003001 N/A N/A N/A 267.180±2.89 N/A N/A 1088.673±325.67 503.311±697.67 674.812±0.00 N/A 758.524±0.00 N/A N/A N/A
ENSDART00000134939 N/A N/A N/A N/A N/A N/A 0.635±0.00 0.638±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146573 N/A N/A N/A 44.455±0.00 N/A N/A 0.433±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109113 ENST00000301043 N/A N/A N/A N/A N/A N/A N/A N/A 1.041±0.00 N/A N/A 21.199±0.00 N/A N/A
ENST00000353676 N/A N/A N/A 1.148±0.00 1.561±0.00 N/A N/A N/A N/A N/A N/A 63.488±0.00 N/A N/A
ENST00000395242 6.909±0.00 N/A N/A 4.478±0.00 N/A 11.803±0.00 2.011±0.00 9.763±0.00 N/A 7.577±7.23 1.605±0.00 19.899±16.70 N/A 5.117±0.00
ENST00000395243 N/A N/A N/A N/A N/A N/A 1.692±0.00 N/A 0.558±0.00 N/A N/A 24.175±0.00 6.765±0.14 5.615±0.00
ENST00000395245 11.035±0.00 10.964±0.00 N/A N/A 10.553±0.00 N/A 1.117±0.00 13.335±0.00 1.730±0.00 N/A N/A 23.417±0.00 8.578±3.18 N/A
ENST00000412625 N/A N/A N/A N/A 0.744±0.00 N/A 0.493±0.00 N/A N/A 1.219±0.00 N/A 3.817±0.00 N/A N/A
ENST00000415040 N/A 5.949±0.00 N/A N/A 5.584±0.00 15.165±0.00 2.674±0.00 16.350±0.00 2.434±0.00 29.626±0.00 0.604±0.00 27.426±3.55 6.366±2.69 8.478±4.92
ENST00000419712 N/A N/A N/A 8.494±0.00 N/A N/A N/A N/A N/A N/A N/A 92.548±0.00 34.297±0.00 6.670±0.00
ENST00000422279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430132 N/A N/A N/A 0.864±0.00 N/A N/A N/A 1.023±0.00 N/A N/A N/A N/A 6.553±0.00 4.110±0.00
ENST00000436730 10.095±0.00 11.756±0.00 N/A 4.828±0.00 1.871±0.00 10.057±9.24 N/A N/A 2.397±0.00 N/A N/A N/A N/A 9.451±0.00
ENST00000450529 N/A 9.077±0.00 N/A N/A N/A N/A N/A N/A N/A 0.375±0.00 1.098±0.00 23.292±0.00 N/A 8.545±0.00
ENST00000453384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474704 N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A N/A 1.179±0.00 N/A N/A N/A N/A
ENST00000481501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483554 N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484161 N/A N/A 0.912±0.00 1.104±0.00 N/A 0.408±0.00 N/A N/A N/A N/A 1.359±0.00 27.659±0.00 N/A N/A
ENST00000496866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583538 N/A N/A N/A 1.407±0.00 N/A N/A N/A N/A N/A N/A 2.085±0.00 N/A N/A N/A
ENSG00000198242 ENST00000355731 153.142±0.00 214.576±0.00 21.146±0.00 37.073±9.47 71.108±6.19 136.289±55.70 40.301±0.00 30.816±13.72 81.924±0.00 74.787±0.00 34.735±0.00 311.296±310.86 412.556±295.27 74.331±54.65
ENST00000394935 106.388±0.00 173.711±0.00 N/A 44.524±0.00 60.693±30.90 112.275±92.67 22.437±9.02 87.215±46.03 74.548±47.33 331.629±0.00 182.267±152.14 117.402±76.54 139.124±0.00 72.081±45.47
ENST00000394938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.688±0.00
ENST00000422514 N/A N/A N/A 7.788±2.92 N/A N/A N/A 21.510±0.00 9.928±0.00 29.185±0.00 N/A 29.723±15.70 N/A N/A
ENST00000472628 N/A N/A 8.579±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496182 N/A N/A N/A N/A N/A N/A 86.995±0.00 N/A N/A N/A N/A 144.204±75.44 N/A N/A
ENST00000578181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582736 185.953±0.00 237.563±0.00 14.297±0.00 32.532±9.85 94.727±12.07 98.192±56.07 30.574±0.00 52.999±0.00 65.847±0.00 49.143±0.00 56.352±8.49 101.575±0.00 N/A 96.897±0.00
ENSG00000264577 ENST00000582718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.224±15.87 51.527±4.23 22.286±0.00

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