C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB34, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395245 RAB34-018 ENSG00000109113 9606 - 17:28714314-28717893 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverOvaryPlacentaENST00000395245
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Ovary Placenta
ENST00000395245 11.035±0.00 10.964±0.00 10.553±0.00 1.117±0.00 13.335±0.00 1.730±0.00 23.417±0.00 8.578±3.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DE CIL_0000DE_0002 CGP 17:28714284-28724359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005795 IDA Golgi stack
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019882 IMP antigen processing and presentation
GO:0031982 IDA vesicle
GO:0031985 IDA Golgi cisterna
GO:0032418 IDA lysosome localization
GO:0043001 IDA Golgi to plasma membrane protein transport
GO:0045335 IDA phagocytic vesicle
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome
GO:0072659 IDA protein localization to plasma membrane
GO:0090382 IMP phagosome maturation
GO:0090385 IMP phagosome-lysosome fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108322 Rab34-003 protein_coding Mus_musculus 0 1461
ENSMUST00000056241 Rab34-008 protein_coding Mus_musculus 0 1317
ENSMUST00000002128 Rab34-001 protein_coding Mus_musculus 0 1284
ENSMUST00000150941 Rab34-002 protein_coding Mus_musculus 0 887
ENSMUST00000156435 Rab34-007 protein_coding Mus_musculus 0 520
ENSMUST00000148603 Rab34-004 retained_intron Mus_musculus 0 398
ENSMUST00000126864 Rab34-005 retained_intron Mus_musculus 0 375
ENSMUST00000154542 Rab34-006 retained_intron Mus_musculus 4e-39 167

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