C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB, member of RAS oncogene family-like 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395590 RABL2B-004 ENSG00000079974 9606 - 22:50771210-50783630 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395590
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395590 1.803±0.00 1.135±0.00 0.686±0.02 0.428±0.00 1.585±0.00 0.696±0.00 1.022±0.26 0.100±0.00 2.012±0.21 1.121±0.00 3.323±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0001 CGP 22:50738196-50783663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172053 Rabl2-006 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000165747 Rabl2-004 retained_intron Mus_musculus 0 327
ENSMUST00000023294 Rabl2-001 protein_coding Mus_musculus 0 327
ENSMUST00000163376 Rabl2-003 retained_intron Mus_musculus 0 207
ENSMUST00000170126 Rabl2-009 nonsense_mediated_decay Mus_musculus 0 207
ENSMUST00000171142 Rabl2-007 processed_transcript Mus_musculus 9e-27 126
ENSMUST00000171580 Rabl2-008 nonsense_mediated_decay Mus_musculus 4e-25 121

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