C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB, member of RAS oncogene family-like 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395595 RABL2B-006 ENSG00000079974 9606 - 22:50767506-50783663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000395595
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000395595 1.456±0.00 3.106±0.00 3.191±0.93 2.212±0.00 1.606±0.00 0.662±0.00 3.002±0.00 0.371±0.00 2.949±0.00 2.034±0.70 2.125±0.19 3.751±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066R CIL_00066R_0001 CGP 22:50738196-50783663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023294 Rabl2-001 protein_coding Mus_musculus 0 747
ENSMUST00000165747 Rabl2-004 retained_intron Mus_musculus 0 479
ENSMUST00000172053 Rabl2-006 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000171580 Rabl2-008 nonsense_mediated_decay Mus_musculus 0 272
ENSMUST00000094056 Rabl2-002 protein_coding Mus_musculus 0 272
ENSMUST00000172074 Rabl2-011 retained_intron Mus_musculus 0 270
ENSMUST00000169466 Rabl2-010 nonsense_mediated_decay Mus_musculus 0 268
ENSMUST00000163376 Rabl2-003 retained_intron Mus_musculus 0 207
ENSMUST00000170126 Rabl2-009 nonsense_mediated_decay Mus_musculus 0 207
ENSMUST00000171826 Rabl2-005 protein_coding Mus_musculus 0 193
ENSMUST00000171142 Rabl2-007 processed_transcript Mus_musculus 9e-27 126

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