C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395761 CXCL1-001 ENSG00000163739 9606 + 4:73869404-73871242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395761
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395761 0.922±0.00 1.457±0.00 0.866±0.43 1.363±1.00 1.242±0.38 0.314±0.27 3.232±0.00 1.652±0.17 17.854±15.55 0.117±0.00 19.837±15.11 2.428±1.74 0.182±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035Y CIL_00035Y_0001 CGP 4:73853189-73871242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005576 TAS:IEA extracellular region
GO:0005615 IEA extracellular space
GO:0006935 TAS chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007186 TAS G-protein coupled receptor signaling pathway
GO:0007399 TAS nervous system development
GO:0008009 IEA chemokine activity
GO:0008047 TAS enzyme activator activity
GO:0008083 IEA growth factor activity
GO:0008283 TAS cell proliferation
GO:0008285 TAS negative regulation of cell proliferation
GO:0030036 TAS actin cytoskeleton organization
GO:0035556 TAS intracellular signal transduction
GO:0043085 TAS positive regulation of catalytic activity
GO:0060326 IEA cell chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031327 Cxcl1-001 protein_coding Mus_musculus 2e-35 154

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