C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031327 Cxcl1-001 ENSMUSG00000029380 10090 + 5:90891241-90893115 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031327 1.208±0.64 3.122±1.35 0.588±0.14 0.053±0.03 3.425±2.51 0.972±0.27 1.013±0.46 0.645±0.47 1.882±1.05 1.333±0.71 0.071±0.02 4.495±2.22 2.291±1.20 0.140±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035G CIL_00035G_0002 CGP 5:90891241-90905909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IDA extracellular space
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0008009 IEA chemokine activity
GO:0008083 IEA growth factor activity
GO:0032930 IDA positive regulation of superoxide anion generation
GO:0060326 IEA cell chemotaxis
GO:0070965 IDA positive regulation of neutrophil mediated killing of fungus
GO:1902035 IDA positive regulation of hematopoietic stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296026 CXCL3-001 protein_coding Homo_sapiens 3e-33 147
ENST00000296031 CXCL2-003 processed_transcript Homo_sapiens 2e-38 163
ENST00000395761 CXCL1-001 protein_coding Homo_sapiens 2e-35 154
ENST00000502974 CXCL3-003 processed_transcript Homo_sapiens 1e-30 137
ENST00000508487 CXCL2-001 protein_coding Homo_sapiens 1.00053e-42 178
ENST00000509101 CXCL1-002 processed_transcript Homo_sapiens 7e-37 158
ENST00000510390 CXCL3-004 processed_transcript Homo_sapiens 3e-32 143

Loading