C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396576 CACNB2-003 ENSG00000165995 9606 + 10:18260769-18541869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000396576
Transcript ID Brain
ENST00000396576 1.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AA CIL_0005AA_0001 CGP 10:17951839-18541869
CIL_0005A3 CIL_0005A3_0001 CGP 10:18140677-18651622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IDA:IEA voltage-gated calcium channel activity
GO:0005262 NAS calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005887 NAS integral component of plasma membrane
GO:0005891 IDA:IEA voltage-gated calcium channel complex
GO:0006810 TAS transport
GO:0007411 TAS axon guidance
GO:0007528 TAS neuromuscular junction development
GO:0008331 IDA high voltage-gated calcium channel activity
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051928 IDA positive regulation of calcium ion transport
GO:0070509 IDA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114719 Cacnb2-007 protein_coding Mus_musculus 0 2326
ENSMUST00000114723 Cacnb2-004 protein_coding Mus_musculus 0 2324
ENSMUST00000114718 Cacnb2-006 protein_coding Mus_musculus 0 621
ENSMUST00000148676 Cacnb2-001 processed_transcript Mus_musculus 0 508
ENSMUST00000123719 Cacnb2-003 processed_transcript Mus_musculus 0 508
ENSMUST00000137746 Cacnb2-005 processed_transcript Mus_musculus 0 508
ENSMUST00000156027 Cacnb2-002 protein_coding Mus_musculus 0 508
ENSMUST00000144423 Cacnb2-008 processed_transcript Mus_musculus 0 315

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