C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396625 COL4A4-001 ENSG00000081052 9606 - 2:227002711-227164113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396625 0.057±0.00 0.993±0.00 2.887±0.00 0.117±0.04 0.127±0.00 0.235±0.12 1.055±0.32 2.934±2.73 0.202±0.06 0.947±0.53 0.333±0.00 0.518±0.33 0.339±0.16 0.762±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AH CIL_0004AH_0002 CGP 2:226835581-227164113
CIL_0004AI CIL_0004AI_0002 CGP 2:227002711-227314792

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IMP:IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 IDA collagen type IV trimer
GO:0005604 IEA basement membrane
GO:0005605 IDA basal lamina
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0032836 IMP glomerular basement membrane development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087050 Col4a4-001 protein_coding Mus_musculus 0 4043
ENSMUST00000135271 Col4a4-002 retained_intron Mus_musculus 0 418

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