C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 106B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396668 TMEM106B-002 ENSG00000106460 9606 + 7:12211241-12233089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396668
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396668 3.816±0.00 1.804±0.00 3.324±0.00 7.287±0.00 3.562±0.82 5.273±1.88 3.036±0.00 4.819±0.00 4.390±0.71 4.611±2.24 2.380±0.00 4.164±0.86 3.754±1.24 3.513±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022R CIL_00022R_0001 CGP 7:11370357-12243367
CIL_00022S CIL_00022S_0001 CGP 7:12211241-12403941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0006810 IEA transport
GO:0008219 IEA cell death
GO:0016021 IEA integral component of membrane
GO:0032418 IMP lysosome localization
GO:0048813 IMP dendrite morphogenesis
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031556 Tmem106b-001 protein_coding Mus_musculus 0 1168
ENSMUST00000122916 Tmem106b-005 protein_coding Mus_musculus 0 680
ENSMUST00000142798 Tmem106b-002 processed_transcript Mus_musculus 0 342
ENSMUST00000136742 Tmem106b-006 retained_intron Mus_musculus 0 342
ENSMUST00000124234 Tmem106b-003 protein_coding Mus_musculus 0 333

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