C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MCF.2 cell line derived transforming sequence-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397017 MCF2L-033 ENSG00000126217 9606 + 13:113074467-113098208 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverMuscleTestisENST00000397017
Transcript ID Adrenal Brain Breast Heart Kidney Liver Muscle Testis
ENST00000397017 1.860±0.00 3.408±0.00 2.972±0.00 2.028±0.00 0.115±0.00 0.429±0.00 0.182±0.00 0.707±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014E CIL_00014E_0001 CGP 13:112690329-113099739
CIL_0000RV CIL_0000RV_0001 CGP 13:112894378-113120681

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126905 Mcf2l-008 protein_coding Mus_musculus 0 2401
ENSMUST00000110871 Mcf2l-017 protein_coding Mus_musculus 0 2045
ENSMUST00000145067 Mcf2l-006 protein_coding Mus_musculus 0 2043
ENSMUST00000110873 Mcf2l-018 protein_coding Mus_musculus 0 2043
ENSMUST00000110866 Mcf2l-004 protein_coding Mus_musculus 0 2043
ENSMUST00000110867 Mcf2l-003 protein_coding Mus_musculus 0 2043
ENSMUST00000098927 Mcf2l-019 protein_coding Mus_musculus 0 2043
ENSMUST00000110879 Mcf2l-014 protein_coding Mus_musculus 0 2043
ENSMUST00000110876 Mcf2l-001 protein_coding Mus_musculus 0 2043
ENSMUST00000173099 Mcf2l-016 protein_coding Mus_musculus 0 2043
ENSMUST00000095456 Mcf2l-009 protein_coding Mus_musculus 0 2043
ENSMUST00000173006 Mcf2l-007 protein_coding Mus_musculus 0 1666
ENSMUST00000123811 Mcf2l-022 protein_coding Mus_musculus 0 457
ENSMUST00000134227 Mcf2l-015 protein_coding Mus_musculus 0 433
ENSMUST00000139776 Mcf2l-021 protein_coding Mus_musculus 0 412
ENSMUST00000127229 Mcf2l-012 retained_intron Mus_musculus 0 198

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