C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mcf.2 transforming sequence-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173099 Mcf2l-016 ENSMUSG00000031442 10090 + 8:12915256-13020905 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryENSMUST00000173099
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary
ENSMUST00000173099 1.250±0.49 0.532±0.00 0.972±0.00 2.203±0.25 1.086±0.00 0.054±0.00 2.730±0.08 0.808±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014E CIL_00014E_0002 CGP 8:12757014-13020905
CIL_0000RV CIL_0000RV_0002 CGP 8:12873806-13035809

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IDA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005545 IDA 1-phosphatidylinositol binding
GO:0007266 IDA Rho protein signal transduction
GO:0016020 IDA membrane
GO:0030027 IDA lamellipodium
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261963 MCF2L-034 protein_coding Homo_sapiens 0 625
ENST00000375597 MCF2L-003 protein_coding Homo_sapiens 0 3123
ENST00000375604 MCF2L-201 protein_coding Homo_sapiens 0 3291
ENST00000375608 MCF2L-001 protein_coding Homo_sapiens 0 3291
ENST00000397017 MCF2L-033 protein_coding Homo_sapiens 0 2043
ENST00000397024 MCF2L-018 protein_coding Homo_sapiens 0 311
ENST00000397030 MCF2L-002 protein_coding Homo_sapiens 0 3310
ENST00000409954 MCF2L-030 protein_coding Homo_sapiens 0 532
ENST00000413354 MCF2L-011 protein_coding Homo_sapiens 0 684
ENST00000421756 MCF2L-024 protein_coding Homo_sapiens 0 3293
ENST00000423251 MCF2L-023 protein_coding Homo_sapiens 0 527
ENST00000433807 MCF2L-025 protein_coding Homo_sapiens 0 302
ENST00000453297 MCF2L-029 protein_coding Homo_sapiens 0 243
ENST00000464800 MCF2L-009 retained_intron Homo_sapiens 0 549
ENST00000469415 MCF2L-021 retained_intron Homo_sapiens 0 289
ENST00000473345 MCF2L-008 protein_coding Homo_sapiens 1.4013e-45 185
ENST00000475524 MCF2L-026 processed_transcript Homo_sapiens 0 508
ENST00000486210 MCF2L-031 retained_intron Homo_sapiens 0 311
ENST00000486806 MCF2L-019 protein_coding Homo_sapiens 3e-34 148
ENST00000487354 MCF2L-027 retained_intron Homo_sapiens 0 313
ENST00000488765 MCF2L-020 retained_intron Homo_sapiens 0 289
ENST00000535094 MCF2L-005 protein_coding Homo_sapiens 0 3290

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