C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neutrophil cytosolic factor 4, 40kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397147 NCF4-002 ENSG00000100365 9606 + 22:36860988-36878015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartLungMuscleOvaryTestisENST00000397147
Transcript ID Adrenal Breast Heart Lung Muscle Ovary Testis
ENST00000397147 4.243±0.00 1.236±0.13 0.334±0.00 4.378±0.00 0.204±0.15 1.109±0.00 0.493±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006F3 CIL_0006F3_0002 CGP 22:36800684-36878015
CIL_0003GY CIL_0003GY_0001 CGP 22:36860988-36940449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006955 TAS immune response
GO:0010008 IDA endosome membrane
GO:0016020 IDA membrane
GO:0016176 IMP superoxide-generating NADPH oxidase activator activity
GO:0032010 TAS phagolysosome
GO:0032266 IDA phosphatidylinositol-3-phosphate binding
GO:0035091 IEA phosphatidylinositol binding
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0043020 IDA NADPH oxidase complex
GO:0043085 IMP positive regulation of catalytic activity
GO:0046983 TAS protein dimerization activity
GO:0051701 TAS interaction with host
GO:0055114 TAS oxidation-reduction process
GO:0090382 TAS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148646 Ncf4-006 retained_intron Mus_musculus 0 278
ENSMUST00000096357 Ncf4-001 protein_coding Mus_musculus 0 261

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