C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEK proto-oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397239 DEK-001 ENSG00000124795 9606 - 6:18223868-18264823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000397239
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000397239 1.546±0.00 4.808±0.00 8.994±0.00 9.360±0.00 2.061±0.00 7.352±0.00 13.221±0.00 11.941±0.00 1.936±0.00 8.572±2.45 9.270±6.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0001 VISTA 6:17631749-18233261
CIL_0003RV CIL_0003RV_0001 CGP 6:18155329-18264823
CIL_00041Y CIL_00041Y_0001 CGP 6:18223868-18468874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0016568 IEA chromatin modification
GO:0019079 TAS viral genome replication
GO:0042393 IDA histone binding
GO:0043292 IEA contractile fiber
GO:0044822 IDA poly(A) RNA binding
GO:2000779 IMP regulation of double-strand break repair
GO:2001032 IEA regulation of double-strand break repair via nonhomologous end joining

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021807 Dek-001 protein_coding Mus_musculus 0 1718
ENSMUST00000138401 Dek-003 processed_transcript Mus_musculus 0 1044
ENSMUST00000129352 Dek-006 protein_coding Mus_musculus 0 905
ENSMUST00000135278 Dek-002 protein_coding Mus_musculus 0 676
ENSMUST00000143933 Dek-005 processed_transcript Mus_musculus 0 379

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