C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEK oncogene (DNA binding)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021807 Dek-001 ENSMUSG00000021377 10090 - 13:47084782-47106190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021807
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021807 1.417±0.63 23.149±3.61 17.429±1.42 3.332±1.63 3.530±1.15 1.061±0.48 2.697±0.39 58.895±65.03 4.818±1.68 4.950±2.28 7.070±6.34 24.501±8.95 2.099±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090E CIL_00090E_0002 VISTA 13:46584783-47186478
CIL_0008X6 CIL_0008X6_0002 VISTA 13:47010584-47612217
CIL_0003RV CIL_0003RV_0002 CGP 13:47043499-47106201
CIL_0007V4 CIL_0007V4_0002 VISTA 13:47067148-47669233
CIL_00041Y CIL_00041Y_0002 CGP 13:47084775-47247991

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0016568 IEA chromatin modification
GO:0042393 IEA histone binding
GO:0043292 IDA contractile fiber
GO:0044822 IEA poly(A) RNA binding
GO:2000779 IEA regulation of double-strand break repair
GO:2001032 IMP regulation of double-strand break repair via nonhomologous end joining

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244776 DEK-002 protein_coding Homo_sapiens 0 1214
ENST00000397239 DEK-001 protein_coding Homo_sapiens 0 1718
ENST00000503715 DEK-005 protein_coding Homo_sapiens 0 573
ENST00000505224 DEK-003 nonsense_mediated_decay Homo_sapiens 0 1133
ENST00000512145 DEK-008 retained_intron Homo_sapiens 0 597
ENST00000515742 DEK-006 protein_coding Homo_sapiens 0 483
ENST00000515770 DEK-007 nonsense_mediated_decay Homo_sapiens 0 514

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