C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collapsin response mediator protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397890 CRMP1-003 ENSG00000072832 9606 - 4:5820783-5888481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungMuscleOvaryPlacentaTestisENST00000397890
Transcript ID Brain Lung Muscle Ovary Placenta Testis
ENST00000397890 26.304±18.06 5.506±0.00 0.476±0.00 3.814±2.23 6.411±0.60 2.032±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006208 IEA pyrimidine nucleobase catabolic process
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0016787 IEA hydrolase activity
GO:0016810 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016812 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031004 Crmp1-201 protein_coding Mus_musculus 0 2671
ENSMUST00000114158 Crmp1-202 protein_coding Mus_musculus 0 2553
ENSMUST00000022629 Dpysl2-001 protein_coding Mus_musculus 0 819
ENSMUST00000026551 Dpysl4-001 protein_coding Mus_musculus 0 558
ENSMUST00000121184 Dpysl4-004 protein_coding Mus_musculus 0 532
ENSMUST00000154273 Dpysl4-002 retained_intron Mus_musculus 0 416
ENSMUST00000122844 Dpysl4-003 retained_intron Mus_musculus 0 407

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