| Transcript ID | Breast |
|---|---|
| ENST00000399126 | 0.209±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | collagen, type XXV, alpha 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000399126  |
COL25A1-002 |
ENSG00000188517 |
9606 | - |
4:108823876-109302643  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000872 | CIL_000872_0001 | VISTA | 4:108310752-108912309 |
| CIL_0008PU | CIL_0008PU_0001 | VISTA | 4:108672054-109274138 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001540 | IDA | beta-amyloid binding |
| GO:0005576 | IDA | extracellular region |
| GO:0005581 | IEA | collagen trimer |
| GO:0005615 | IDA | extracellular space |
| GO:0005788 | TAS | endoplasmic reticulum lumen |
| GO:0005886 | TAS | plasma membrane |
| GO:0005887 | IDA | integral component of plasma membrane |
| GO:0008201 | IDA | heparin binding |
| GO:0016021 | NAS | integral component of membrane |
| GO:0022617 | TAS | extracellular matrix disassembly |
| GO:0030198 | TAS | extracellular matrix organization |
| GO:0030574 | TAS | collagen catabolic process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000080335
|
Col25a1-002 | protein_coding | Mus_musculus | 0 | 2063 |
|
ENSMUST00000183368
|
Col25a1-004 | nonsense_mediated_decay | Mus_musculus | 0 | 1836 |
|
ENSMUST00000143830
|
Col25a1-003 | retained_intron | Mus_musculus | 0 | 1197 |
|
ENSMUST00000106353
|
Col25a1-001 | protein_coding | Mus_musculus | 0 | 852 |
