C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399127 COL25A1-003 ENSG00000188517 9606 - 4:108823876-109302367 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000399127
Transcript ID Bladder Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000399127 0.249±0.00 0.064±0.00 0.056±0.05 0.361±0.00 0.212±0.00 0.139±0.00 0.343±0.00 0.043±0.03 3.591±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000872 CIL_000872_0001 VISTA 4:108310752-108912309
CIL_0008PU CIL_0008PU_0001 VISTA 4:108672054-109274138

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005887 IEA integral component of plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143830 Col25a1-003 retained_intron Mus_musculus 0 1493
ENSMUST00000183368 Col25a1-004 nonsense_mediated_decay Mus_musculus 0 1325
ENSMUST00000080335 Col25a1-002 protein_coding Mus_musculus 0 1325
ENSMUST00000106353 Col25a1-001 protein_coding Mus_musculus 0 1092

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