C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin fusion degradation 1 like (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399523 UFD1L-003 ENSG00000070010 9606 - 22:19450621-19479172 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000399523
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000399523 23.107±0.00 27.665±0.00 23.048±0.00 25.378±0.00 15.032±9.80 25.812±0.00 38.043±0.00 35.216±0.00 20.168±0.00 40.745±0.00 21.769±5.30 45.386±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0004843 TAS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006511 IEA:TAS ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005394 Ufd1l-201 protein_coding Mus_musculus 0 972
ENSMUST00000115578 Ufd1l-001 protein_coding Mus_musculus 0 972
ENSMUST00000163695 Ufd1l-003 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000171789 Ufd1l-009 nonsense_mediated_decay Mus_musculus 6e-40 169
ENSMUST00000164795 Ufd1l-004 processed_transcript Mus_musculus 6e-40 169
ENSMUST00000172013 Ufd1l-002 nonsense_mediated_decay Mus_musculus 6e-40 169
ENSMUST00000168822 Ufd1l-008 protein_coding Mus_musculus 1e-37 161

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