C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399722 RBBP8-004 ENSG00000101773 9606 + 18:22933826-23026488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLungTestisENST00000399722
Transcript ID Bladder Brain Breast Heart Lung Testis
ENST00000399722 0.693±0.00 0.371±0.00 0.682±0.00 0.399±0.00 0.391±0.00 2.340±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NS CIL_0005NS_0001 CGP 18:22798261-23260467

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000014 IMP single-stranded DNA endodeoxyribonuclease activity
GO:0000075 TAS cell cycle checkpoint
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000724 IDA double-strand break repair via homologous recombination
GO:0000737 IMP DNA catabolic process, endonucleolytic
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0001835 IEA blastocyst hatching
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006281 TAS DNA repair
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007067 IEA mitotic nuclear division
GO:0010792 IMP DNA double-strand break processing involved in repair via single-strand annealing
GO:0017053 IDA transcriptional repressor complex
GO:0031572 IDA G2 DNA damage checkpoint
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115861 Rbbp8-202 protein_coding Mus_musculus 0 2645
ENSMUST00000047322 Rbbp8-201 protein_coding Mus_musculus 0 2645

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