C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypermethylated in cancer 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399849 HIC1-201 ENSG00000177374 9606 + 17:2055099-2059686 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000399849
Transcript ID Lung Ovary
ENST00000399849 24.286±0.00 65.921±27.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995
CIL_0007KQ CIL_0007KQ_0001 UCNEbase 17:1996571-2212289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA:ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000785 ISS chromatin
GO:0003700 IEA:IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008630 IEA:IDA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0016055 IEA Wnt signaling pathway
GO:0030178 IDA negative regulation of Wnt signaling pathway
GO:0042826 IDA histone deacetylase binding
GO:0043517 ISS positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043565 IDA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055619 Hic1-001 protein_coding Mus_musculus 0 2833
ENSMUST00000131720 Hic1-002 processed_transcript Mus_musculus 0 592

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