C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401473 HMGA1-002 ENSG00000137309 9606 + 6:34236873-34246231 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000401473
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000401473 4.566±0.00 5.102±0.00 3.384±0.00 5.416±0.00 4.717±0.00 1.912±0.00 0.559±0.26 13.052±0.00 10.959±9.74 32.357±29.68 42.643±15.30 24.793±4.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000251 CIL_000251_0001 CGP 6:34018645-34246231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003677 TAS:IEA DNA binding
GO:0003680 TAS AT DNA binding
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 TAS transcription factor complex
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006268 NAS DNA unwinding involved in DNA replication
GO:0006284 IDA base-excision repair
GO:0006337 TAS nucleosome disassembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006461 TAS protein complex assembly
GO:0008134 IDA transcription factor binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0009615 IEP response to virus
GO:0016032 TAS viral process
GO:0019899 IPI enzyme binding
GO:0030374 IMP ligand-dependent nuclear receptor transcription coactivator activity
GO:0031936 TAS negative regulation of chromatin silencing
GO:0035985 IDA senescence-associated heterochromatin focus
GO:0035986 IDA senescence-associated heterochromatin focus assembly
GO:0042974 IDA retinoic acid receptor binding
GO:0042975 IDA peroxisome proliferator activated receptor binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046965 IDA retinoid X receptor binding
GO:0051575 IDA 5'-deoxyribose-5-phosphate lyase activity
GO:0075713 TAS establishment of integrated proviral latency
GO:0090402 IDA oncogene-induced cell senescence
GO:2000774 IMP positive regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118570 Hmga1-003 protein_coding Mus_musculus 0 510
ENSMUST00000114888 Hmga1-002 protein_coding Mus_musculus 0 459
ENSMUST00000117254 Hmga1-004 protein_coding Mus_musculus 0 309
ENSMUST00000119486 Hmga1-006 protein_coding Mus_musculus 0 309
ENSMUST00000117600 Hmga1-001 protein_coding Mus_musculus 0 309
ENSMUST00000105046 Hmga1-rs1-001 protein_coding Mus_musculus 0 309
ENSMUST00000118599 Hmga1-005 protein_coding Mus_musculus 0 285

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