C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000251_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124493-ENSG00000137309 CGP 9606 6:34018645-34246231
GeneTranscriptPositionBiotype
ENSG00000124493 (GRM4)
glutamate receptor, metabotropic 4 		ENST00000374177 (GRM4-002) 34021854-34155622 protein_coding
ENST00000374181 (GRM4-201) 34018645-34146137 protein_coding
ENST00000455714 (GRM4-005) 34022597-34102151 protein_coding
ENST00000535756 (GRM4-202) 34018645-34103854 protein_coding
ENST00000538487 (GRM4-001) 34021851-34146080 protein_coding
ENST00000544773 (GRM4-003) 34022433-34111034 protein_coding
ENST00000545715 (GRM4-009) 34022138-34063635 processed_transcript
ENST00000607916 (GRM4-006) 34091584-34133756 retained_intron
ENST00000609222 (GRM4-004) 34022178-34105967 protein_coding
ENST00000609278 (GRM4-010) 34022821-34146092 nonsense_mediated_decay
ENST00000609443 (GRM4-011) 34040705-34100088 protein_coding
ENST00000609860 (GRM4-008) 34022185-34063239 retained_intron
ENST00000609915 (GRM4-012) 34040711-34056323 processed_transcript
ENST00000609973 (GRM4-007) 34054179-34133021 retained_intron
ENSG00000137309 (HMGA1)
high mobility group AT-hook 1 		ENST00000311487 (HMGA1-004) 34236873-34246231 protein_coding
ENST00000347617 (HMGA1-001) 34236873-34246231 protein_coding
ENST00000374116 (HMGA1-201) 34238791-34246230 protein_coding
ENST00000401473 (HMGA1-002) 34236873-34246231 protein_coding
ENST00000447654 (HMGA1-202) 34236873-34246230 protein_coding
ENST00000478214 (HMGA1-003) 34237204-34245151 processed_transcript
ENSG00000214810 (CYCSP55)
cytochrome c, somatic pseudogene 55 		ENST00000399027 (CYCSP55-001) 34219439-34220066 processed_pseudogene
ENSG00000271231 (KRT18P9)
keratin 18 pseudogene 9 		ENST00000604826 (KRT18P9-001) 34189780-34191079 processed_pseudogene
ENSG00000276404 (MIR6835)
microRNA 6835 		ENST00000621552 (MIR6835-201) 34240673-34240736 miRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000251_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063239-ENSMUSG00000046711 CGP 10090 17:27422387-27563674
GeneTranscriptPositionBiotype
ENSMUSG00000046711 (Hmga1)
high mobility group AT-hook 1 		ENSMUST00000114888 (Hmga1-002) 27556623-27563668 protein_coding
ENSMUST00000117254 (Hmga1-004) 27556668-27563060 protein_coding
ENSMUST00000117600 (Hmga1-001) 27556620-27563674 protein_coding
ENSMUST00000118570 (Hmga1-003) 27556668-27563663 protein_coding
ENSMUST00000118599 (Hmga1-005) 27556658-27562491 protein_coding
ENSMUST00000119486 (Hmga1-006) 27556641-27563025 protein_coding
ENSMUSG00000062753 (AI413582)
expressed sequence AI413582 		ENSMUST00000080190 (AI413582-003) 27563771-27565708 nonsense_mediated_decay
ENSMUST00000138728 (AI413582-002) 27563773-27565749 retained_intron
ENSMUST00000145183 (AI413582-004) 27564682-27565667 processed_transcript
ENSMUST00000154473 (AI413582-001) 27563575-27565732 protein_coding
ENSMUSG00000063239 (Grm4)
glutamate receptor, metabotropic 4 		ENSMUST00000118161 (Grm4-002) 27425904-27513341 protein_coding
ENSMUST00000118489 (Grm4-001) 27422387-27503304 protein_coding
ENSMUST00000146277 (Grm4-003) 27450156-27473316 retained_intron
ENSMUST00000147865 (Grm4-004) 27451629-27473067 processed_transcript
ENSMUSG00000082741 (Gm9703)
predicted gene 9703 		ENSMUST00000119573 (Gm9703-001) 27530067-27530409 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000251_0001ENSG00000124493ENST00000374177ENST00000374181ENST00000455714ENST00000535756ENST00000538487ENST00000544773ENST00000545715ENST00000607916ENST00000609222ENST00000609278ENST00000609443ENST00000609860ENST00000609915ENST00000609973ENSG00000137309ENST00000311487ENST00000347617ENST00000374116ENST00000401473ENST00000447654ENST00000478214ENSG00000214810ENST00000399027ENSG00000271231ENST00000604826ENSG00000276404ENST00000621552CIL_000251_0002ENSMUSG00000046711ENSMUST00000114888ENSMUST00000117254ENSMUST00000117600ENSMUST00000118570ENSMUST00000118599ENSMUST00000119486ENSMUSG00000062753ENSMUST00000080190ENSMUST00000138728ENSMUST00000145183ENSMUST00000154473ENSMUSG00000063239ENSMUST00000118161ENSMUST00000118489ENSMUST00000146277ENSMUST00000147865ENSMUSG00000082741ENSMUST00000119573
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000251_0001ENSG00000124493ENST00000374177ENST00000374181ENST00000455714ENST00000538487ENST00000545715ENST00000607916ENST00000609222ENST00000609443ENST00000609860ENST00000609915ENST00000609973ENSG00000137309ENST00000311487ENST00000347617ENST00000401473ENST00000447654ENST00000478214ENSG00000214810ENST00000399027ENSG00000271231ENST00000604826ENSG00000276404ENST00000621552CIL_000251_0002ENSMUSG00000046711ENSMUST00000114888ENSMUST00000117254ENSMUST00000117600ENSMUST00000118570ENSMUST00000118599ENSMUST00000119486ENSMUSG00000062753ENSMUST00000080190ENSMUST00000138728ENSMUST00000154473ENSMUSG00000063239ENSMUST00000118161ENSMUST00000118489ENSMUST00000146277ENSMUST00000147865ENSMUSG00000082741ENSMUST00000119573
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124493 ENST00000374177 N/A 0.110±0.00 N/A N/A 0.051±0.00 0.031±0.00 0.007±0.00 0.045±0.00 N/A 0.038±0.00 N/A N/A N/A 0.459±0.00
ENST00000374181 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A
ENST00000455714 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538487 N/A N/A N/A 0.403±0.32 N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 0.288±0.00
ENST00000544773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 0.067±0.00 0.488±0.15
ENST00000607916 N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609222 N/A N/A N/A 0.312±0.17 N/A 0.098±0.00 N/A N/A N/A N/A N/A 0.093±0.00 N/A 0.261±0.00
ENST00000609278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 0.113±0.00 N/A N/A
ENST00000609860 N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.068±0.00 N/A N/A
ENST00000609915 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A N/A
ENST00000609973 0.020±0.00 N/A N/A N/A 0.033±0.00 0.014±0.00 0.007±0.00 N/A N/A 0.004±0.00 N/A 0.016±0.00 N/A 0.079±0.00
ENSG00000137309 ENST00000311487 15.999±0.00 14.473±0.00 N/A 1.946±0.13 4.531±0.00 9.521±5.73 7.399±7.06 8.118±0.00 2.255±1.47 22.018±19.75 19.043±16.78 24.875±20.63 82.372±49.54 48.544±29.99
ENST00000347617 N/A N/A N/A N/A N/A 2.856±0.00 N/A N/A N/A N/A N/A 6.921±3.56 41.627±0.00 N/A
ENST00000374116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000401473 4.566±0.00 5.102±0.00 N/A 3.384±0.00 5.416±0.00 4.717±0.00 N/A 1.912±0.00 0.559±0.26 13.052±0.00 10.959±9.74 32.357±29.68 42.643±15.30 24.793±4.74
ENST00000447654 N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478214 N/A N/A 0.543±0.00 N/A 2.330±0.00 N/A 0.377±0.00 N/A N/A N/A 2.058±0.00 N/A N/A N/A
ENSG00000214810 ENST00000399027 N/A N/A N/A N/A 0.054±0.00 2.384±0.00 1.590±0.00 N/A N/A N/A 0.096±0.00 N/A N/A 0.288±0.00
ENSG00000271231 ENST00000604826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.01
ENSG00000276404 ENST00000621552 N/A 0.691±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046711 ENSMUST00000114888 3.946±0.32 N/A 10.126±2.23 7.152±3.02 5.663±1.23 12.196±1.88 3.312±1.09 2.869±0.51 26.006±30.13 3.575±0.37 6.192±1.66 2.619±0.81 23.003±16.14 2.977±1.42
ENSMUST00000117254 N/A 3.853±0.92 N/A 6.265±0.00 5.154±0.82 8.201±2.49 N/A 2.259±0.00 N/A 2.717±0.00 N/A 2.619±0.34 N/A 0.723±0.00
ENSMUST00000117600 1.595±0.23 N/A 6.271±1.39 17.835±5.25 4.305±0.53 N/A 5.304±0.43 3.315±1.50 20.465±17.00 3.880±0.95 4.075±1.21 2.742±0.61 21.426±2.59 7.912±1.29
ENSMUST00000118570 N/A 1.842±0.00 3.378±0.18 6.658±0.00 N/A 5.370±1.20 1.786±0.57 N/A 0.583±0.17 2.348±0.14 N/A 3.530±1.49 N/A 1.690±0.00
ENSMUST00000118599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.382±1.59 N/A 80.890±0.00 N/A
ENSMUST00000119486 N/A N/A N/A N/A N/A 8.177±0.00 N/A N/A 21.326±3.22 N/A 6.947±1.38 N/A 12.792±4.94 N/A
ENSMUSG00000062753 ENSMUST00000080190 N/A 11.789±1.26 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.157±0.00 N/A N/A
ENSMUST00000138728 3.714±0.00 14.066±3.23 N/A N/A 11.548±4.36 13.229±0.00 N/A 4.435±0.00 2.563±0.56 8.227±0.87 N/A 6.827±1.71 N/A N/A
ENSMUST00000145183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154473 15.855±1.06 14.078±5.31 15.964±3.56 11.560±1.63 13.708±5.42 22.084±2.70 5.072±1.95 14.129±1.16 3.321±0.73 13.522±1.20 N/A 10.711±4.11 19.633±8.93 7.771±3.78
ENSMUSG00000063239 ENSMUST00000118161 0.039±0.00 0.038±0.02 0.041±0.00 5.703±2.98 0.045±0.02 0.059±0.04 0.107±0.05 0.011±0.00 0.005±0.00 0.147±0.03 0.015±0.00 0.819±0.53 0.025±0.03 0.101±0.04
ENSMUST00000118489 0.008±0.00 0.042±0.02 N/A N/A N/A 0.023±0.00 N/A 0.013±0.01 0.007±0.00 0.076±0.00 N/A N/A 0.022±0.01 0.066±0.00
ENSMUST00000146277 0.048±0.00 N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.08 N/A
ENSMUSG00000082741 ENSMUST00000119573 0.458±0.00 N/A 0.045±0.00 0.140±0.00 N/A N/A N/A N/A 0.085±0.00 0.250±0.00 0.158±0.00 0.191±0.05 0.117±0.11 0.600±0.00

Loading