C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000251_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124493-ENSG00000137309 CGP 9606 6:34018645-34246231
GeneTranscriptPositionBiotype
ENSG00000124493 (GRM4)
glutamate receptor, metabotropic 4 		ENST00000374177 (GRM4-002) 34021854-34155622 protein_coding
ENST00000374181 (GRM4-201) 34018645-34146137 protein_coding
ENST00000455714 (GRM4-005) 34022597-34102151 protein_coding
ENST00000535756 (GRM4-202) 34018645-34103854 protein_coding
ENST00000538487 (GRM4-001) 34021851-34146080 protein_coding
ENST00000544773 (GRM4-003) 34022433-34111034 protein_coding
ENST00000545715 (GRM4-009) 34022138-34063635 processed_transcript
ENST00000607916 (GRM4-006) 34091584-34133756 retained_intron
ENST00000609222 (GRM4-004) 34022178-34105967 protein_coding
ENST00000609278 (GRM4-010) 34022821-34146092 nonsense_mediated_decay
ENST00000609443 (GRM4-011) 34040705-34100088 protein_coding
ENST00000609860 (GRM4-008) 34022185-34063239 retained_intron
ENST00000609915 (GRM4-012) 34040711-34056323 processed_transcript
ENST00000609973 (GRM4-007) 34054179-34133021 retained_intron
ENSG00000137309 (HMGA1)
high mobility group AT-hook 1 		ENST00000311487 (HMGA1-004) 34236873-34246231 protein_coding
ENST00000347617 (HMGA1-001) 34236873-34246231 protein_coding
ENST00000374116 (HMGA1-201) 34238791-34246230 protein_coding
ENST00000401473 (HMGA1-002) 34236873-34246231 protein_coding
ENST00000447654 (HMGA1-202) 34236873-34246230 protein_coding
ENST00000478214 (HMGA1-003) 34237204-34245151 processed_transcript
ENSG00000214810 (CYCSP55)
cytochrome c, somatic pseudogene 55 		ENST00000399027 (CYCSP55-001) 34219439-34220066 processed_pseudogene
ENSG00000271231 (KRT18P9)
keratin 18 pseudogene 9 		ENST00000604826 (KRT18P9-001) 34189780-34191079 processed_pseudogene
ENSG00000276404 (MIR6835)
microRNA 6835 		ENST00000621552 (MIR6835-201) 34240673-34240736 miRNA
CIL_000251_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063239-ENSMUSG00000046711 CGP 10090 17:27422387-27563674
GeneTranscriptPositionBiotype
ENSMUSG00000046711 (Hmga1)
high mobility group AT-hook 1 		ENSMUST00000114888 (Hmga1-002) 27556623-27563668 protein_coding
ENSMUST00000117254 (Hmga1-004) 27556668-27563060 protein_coding
ENSMUST00000117600 (Hmga1-001) 27556620-27563674 protein_coding
ENSMUST00000118570 (Hmga1-003) 27556668-27563663 protein_coding
ENSMUST00000118599 (Hmga1-005) 27556658-27562491 protein_coding
ENSMUST00000119486 (Hmga1-006) 27556641-27563025 protein_coding
ENSMUSG00000062753 (AI413582)
expressed sequence AI413582 		ENSMUST00000080190 (AI413582-003) 27563771-27565708 nonsense_mediated_decay
ENSMUST00000138728 (AI413582-002) 27563773-27565749 retained_intron
ENSMUST00000145183 (AI413582-004) 27564682-27565667 processed_transcript
ENSMUST00000154473 (AI413582-001) 27563575-27565732 protein_coding
ENSMUSG00000063239 (Grm4)
glutamate receptor, metabotropic 4 		ENSMUST00000118161 (Grm4-002) 27425904-27513341 protein_coding
ENSMUST00000118489 (Grm4-001) 27422387-27503304 protein_coding
ENSMUST00000146277 (Grm4-003) 27450156-27473316 retained_intron
ENSMUST00000147865 (Grm4-004) 27451629-27473067 processed_transcript
ENSMUSG00000082741 (Gm9703)
predicted gene 9703 		ENSMUST00000119573 (Gm9703-001) 27530067-27530409 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000251_0001ENSG00000124493ENST00000374177ENST00000374181ENST00000455714ENST00000535756ENST00000538487ENST00000544773ENST00000545715ENST00000607916ENST00000609222ENST00000609278ENST00000609443ENST00000609860ENST00000609915ENST00000609973ENSG00000137309ENST00000311487ENST00000347617ENST00000374116ENST00000401473ENST00000447654ENST00000478214ENSG00000214810ENST00000399027ENSG00000271231ENST00000604826ENSG00000276404ENST00000621552CIL_000251_0002ENSMUSG00000046711ENSMUST00000114888ENSMUST00000117254ENSMUST00000117600ENSMUST00000118570ENSMUST00000118599ENSMUST00000119486ENSMUSG00000062753ENSMUST00000080190ENSMUST00000138728ENSMUST00000145183ENSMUST00000154473ENSMUSG00000063239ENSMUST00000118161ENSMUST00000118489ENSMUST00000146277ENSMUST00000147865ENSMUSG00000082741ENSMUST00000119573
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000251_0001ENSG00000124493ENST00000374177ENST00000374181ENST00000455714ENST00000538487ENST00000545715ENST00000607916ENST00000609222ENST00000609443ENST00000609860ENST00000609915ENST00000609973ENSG00000137309ENST00000311487ENST00000347617ENST00000401473ENST00000447654ENST00000478214ENSG00000214810ENST00000399027ENSG00000271231ENST00000604826ENSG00000276404ENST00000621552CIL_000251_0002ENSMUSG00000046711ENSMUST00000114888ENSMUST00000117254ENSMUST00000117600ENSMUST00000118570ENSMUST00000118599ENSMUST00000119486ENSMUSG00000062753ENSMUST00000080190ENSMUST00000138728ENSMUST00000154473ENSMUSG00000063239ENSMUST00000118161ENSMUST00000118489ENSMUST00000146277ENSMUST00000147865ENSMUSG00000082741ENSMUST00000119573
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124493 ENST00000374177 N/A 0.110±0.00 N/A N/A 0.051±0.00 0.031±0.00 0.007±0.00 0.045±0.00 N/A 0.038±0.00 N/A N/A N/A 0.459±0.00
ENST00000374181 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A
ENST00000455714 N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538487 N/A N/A N/A 0.403±0.32 N/A N/A N/A N/A N/A N/A N/A N/A 0.180±0.00 0.288±0.00
ENST00000544773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 0.067±0.00 0.488±0.15
ENST00000607916 N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609222 N/A N/A N/A 0.312±0.17 N/A 0.098±0.00 N/A N/A N/A N/A N/A 0.093±0.00 N/A 0.261±0.00
ENST00000609278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 0.113±0.00 N/A N/A
ENST00000609860 N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.068±0.00 N/A N/A
ENST00000609915 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A N/A
ENST00000609973 0.020±0.00 N/A N/A N/A 0.033±0.00 0.014±0.00 0.007±0.00 N/A N/A 0.004±0.00 N/A 0.016±0.00 N/A 0.079±0.00
ENSG00000137309 ENST00000311487 15.999±0.00 14.473±0.00 N/A 1.946±0.13 4.531±0.00 9.521±5.73 7.399±7.06 8.118±0.00 2.255±1.47 22.018±19.75 19.043±16.78 24.875±20.63 82.372±49.54 48.544±29.99
ENST00000347617 N/A N/A N/A N/A N/A 2.856±0.00 N/A N/A N/A N/A N/A 6.921±3.56 41.627±0.00 N/A
ENST00000374116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000401473 4.566±0.00 5.102±0.00 N/A 3.384±0.00 5.416±0.00 4.717±0.00 N/A 1.912±0.00 0.559±0.26 13.052±0.00 10.959±9.74 32.357±29.68 42.643±15.30 24.793±4.74
ENST00000447654 N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000478214 N/A N/A 0.543±0.00 N/A 2.330±0.00 N/A 0.377±0.00 N/A N/A N/A 2.058±0.00 N/A N/A N/A
ENSG00000214810 ENST00000399027 N/A N/A N/A N/A 0.054±0.00 2.384±0.00 1.590±0.00 N/A N/A N/A 0.096±0.00 N/A N/A 0.288±0.00
ENSG00000271231 ENST00000604826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.01
ENSG00000276404 ENST00000621552 N/A 0.691±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046711 ENSMUST00000114888 3.946±0.32 N/A 10.126±2.23 7.152±3.02 5.663±1.23 12.196±1.88 3.312±1.09 2.869±0.51 26.006±30.13 3.575±0.37 6.192±1.66 2.619±0.81 23.003±16.14 2.977±1.42
ENSMUST00000117254 N/A 3.853±0.92 N/A 6.265±0.00 5.154±0.82 8.201±2.49 N/A 2.259±0.00 N/A 2.717±0.00 N/A 2.619±0.34 N/A 0.723±0.00
ENSMUST00000117600 1.595±0.23 N/A 6.271±1.39 17.835±5.25 4.305±0.53 N/A 5.304±0.43 3.315±1.50 20.465±17.00 3.880±0.95 4.075±1.21 2.742±0.61 21.426±2.59 7.912±1.29
ENSMUST00000118570 N/A 1.842±0.00 3.378±0.18 6.658±0.00 N/A 5.370±1.20 1.786±0.57 N/A 0.583±0.17 2.348±0.14 N/A 3.530±1.49 N/A 1.690±0.00
ENSMUST00000118599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.382±1.59 N/A 80.890±0.00 N/A
ENSMUST00000119486 N/A N/A N/A N/A N/A 8.177±0.00 N/A N/A 21.326±3.22 N/A 6.947±1.38 N/A 12.792±4.94 N/A
ENSMUSG00000062753 ENSMUST00000080190 N/A 11.789±1.26 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.157±0.00 N/A N/A
ENSMUST00000138728 3.714±0.00 14.066±3.23 N/A N/A 11.548±4.36 13.229±0.00 N/A 4.435±0.00 2.563±0.56 8.227±0.87 N/A 6.827±1.71 N/A N/A
ENSMUST00000145183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154473 15.855±1.06 14.078±5.31 15.964±3.56 11.560±1.63 13.708±5.42 22.084±2.70 5.072±1.95 14.129±1.16 3.321±0.73 13.522±1.20 N/A 10.711±4.11 19.633±8.93 7.771±3.78
ENSMUSG00000063239 ENSMUST00000118161 0.039±0.00 0.038±0.02 0.041±0.00 5.703±2.98 0.045±0.02 0.059±0.04 0.107±0.05 0.011±0.00 0.005±0.00 0.147±0.03 0.015±0.00 0.819±0.53 0.025±0.03 0.101±0.04
ENSMUST00000118489 0.008±0.00 0.042±0.02 N/A N/A N/A 0.023±0.00 N/A 0.013±0.01 0.007±0.00 0.076±0.00 N/A N/A 0.022±0.01 0.066±0.00
ENSMUST00000146277 0.048±0.00 N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.08 N/A
ENSMUSG00000082741 ENSMUST00000119573 0.458±0.00 N/A 0.045±0.00 0.140±0.00 N/A N/A N/A N/A 0.085±0.00 0.250±0.00 0.158±0.00 0.191±0.05 0.117±0.11 0.600±0.00

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