C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: X-ray repair complementing defective repair in Chinese hamster cells 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069530 Xrcc6-001 ENSMUSG00000022471 10090 + 15:82016369-82040085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000069530
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000069530 7.740±0.50 6.657±0.71 5.569±0.26 7.574±0.37 3.760±0.32 4.393±0.37 4.866±0.31 11.732±7.00 3.462±0.00 8.596±0.94 8.505±4.90 8.565±5.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000723 IEA telomere maintenance
GO:0003684 IEA damaged DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0006302 IMP double-strand break repair
GO:0006303 IMP:ISS double-strand break repair via nonhomologous end joining
GO:0006351 IEA transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0010212 IMP response to ionizing radiation
GO:0032508 IEA DNA duplex unwinding
GO:0033151 IMP V(D)J recombination
GO:0043564 IEA:ISS Ku70:Ku80 complex
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0050769 IMP positive regulation of neurogenesis
GO:0051575 ISS 5'-deoxyribose-5-phosphate lyase activity
GO:0070419 ISS nonhomologous end joining complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359308 XRCC6-003 protein_coding Homo_sapiens 0 1618
ENST00000360079 XRCC6-001 protein_coding Homo_sapiens 0 1620
ENST00000402580 XRCC6-002 protein_coding Homo_sapiens 0 1254
ENST00000405506 XRCC6-005 protein_coding Homo_sapiens 0 1419
ENST00000405878 XRCC6-006 protein_coding Homo_sapiens 0 1635
ENST00000420392 XRCC6P1-001 processed_pseudogene Homo_sapiens 0 1164
ENST00000428575 XRCC6-201 protein_coding Homo_sapiens 0 1419
ENST00000457831 XRCC6P2-001 processed_pseudogene Homo_sapiens 0 1471
ENST00000518193 XRCC6P4-001 processed_pseudogene Homo_sapiens 0 1114

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