C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402907 RP1-95L4.4-001 ENSG00000217648 9606 + 6:143342246-143343383 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000402907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000402907 0.242±0.00 0.560±0.00 0.679±0.00 0.774±0.28 0.973±0.71 0.613±0.00 0.579±0.41 1.989±0.35 1.851±0.85 0.348±0.26 0.951±0.06 0.202±0.03 0.743±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00030J CIL_00030J_0002 CGP 6:143060496-143450673

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048642 Parl-001 protein_coding Mus_musculus 0 1070
ENSMUST00000136700 Parl-005 processed_transcript Mus_musculus 0 640
ENSMUST00000136252 Parl-002 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000121419 Gm15006-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000120117 Gm13181-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000117482 Gm14994-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000133153 Parl-009 nonsense_mediated_decay Mus_musculus 0 411
ENSMUST00000123070 Parl-003 retained_intron Mus_musculus 0 385
ENSMUST00000126001 Parl-008 retained_intron Mus_musculus 0 357
ENSMUST00000152887 Parl-004 processed_transcript Mus_musculus 0 351
ENSMUST00000155832 Parl-007 retained_intron Mus_musculus 0 267
ENSMUST00000143648 Parl-006 retained_intron Mus_musculus 0 259
ENSMUST00000117135 Gm14995-001 processed_pseudogene Mus_musculus 0 193

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