C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: presenilin associated, rhomboid-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048642 Parl-001 ENSMUSG00000033918 10090 - 16:20279820-20302387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048642 15.016±2.16 9.237±3.68 28.777±2.56 15.126±4.65 10.299±3.09 11.564±2.34 20.322±1.38 25.724±3.15 15.800±3.02 11.083±1.14 15.664±0.88 11.561±2.49 13.799±4.84 11.982±5.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G0 CIL_0005G0_0002 CGP 16:20233310-20302387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IMP endopeptidase activity
GO:0004252 IEA serine-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 IMP mitochondrial inner membrane
GO:0006508 IMP proteolysis
GO:0016021 IEA integral component of membrane
GO:0090201 IMP negative regulation of release of cytochrome c from mitochondria
GO:2000377 IEA regulation of reactive oxygen species metabolic process
GO:2001243 IMP negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311101 PARL-002 protein_coding Homo_sapiens 0 662
ENST00000317096 PARL-001 protein_coding Homo_sapiens 0 1358
ENST00000402907 RP1-95L4.4-001 processed_pseudogene Homo_sapiens 0 1070
ENST00000417784 PARL-009 protein_coding Homo_sapiens 0 601
ENST00000418450 PARL-010 protein_coding Homo_sapiens 0 298
ENST00000421484 PARL-004 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000435888 PARL-007 protein_coding Homo_sapiens 0 617
ENST00000449306 PARL-005 protein_coding Homo_sapiens 0 222
ENST00000450375 PARL-008 protein_coding Homo_sapiens 0 239
ENST00000469056 PARL-003 retained_intron Homo_sapiens 0 484
ENST00000482027 RP11-767L7.1-001 processed_pseudogene Homo_sapiens 0 924
ENST00000488202 PARL-006 retained_intron Homo_sapiens 0 396

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