C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU class 6 homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403058 POU6F2-002 ENSG00000106536 9606 + 7:38977998-39464791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000403058
Transcript ID Brain
ENST00000403058 0.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JU CIL_0007JU_0001 UCNEbase 7:38863466-39148105
CIL_0006I6 CIL_0006I6_0002 CGP 7:38977998-39610320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006355 TAS:IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007402 TAS ganglion mother cell fate determination
GO:0007417 TAS central nervous system development
GO:0007601 TAS visual perception

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139064 Pou6f2-001 protein_coding Mus_musculus 0 2362
ENSMUST00000175703 Pou6f2-003 protein_coding Mus_musculus 0 1605
ENSMUST00000175768 Pou6f2-002 processed_transcript Mus_musculus 0 1133
ENSMUST00000176795 Pou6f2-004 nonsense_mediated_decay Mus_musculus 0 1024
ENSDART00000126668 pou6f2-201 protein_coding Danio_rerio 0 763
ENSDART00000144186 pou6f2-001 protein_coding Danio_rerio 0 763
ENSMUST00000176898 Pou6f2-005 processed_transcript Mus_musculus 0 686
ENSMUST00000184299 Pou6f2-201 protein_coding Mus_musculus 0 662
ENSDART00000143107 pou6f2-003 processed_transcript Danio_rerio 0 606
ENSDART00000147489 pou6f2-002 processed_transcript Danio_rerio 0 270

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