C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403230 DDX17-002 ENSG00000100201 9606 - 22:38485878-38506312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverMuscleOvaryENST00000403230
Transcript ID Breast Heart Kidney Liver Muscle Ovary
ENST00000403230 18.842±0.00 16.848±0.00 16.661±0.00 48.759±0.00 17.976±0.00 39.176±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DI CIL_0005DI_0001 CGP 22:38426327-38483447
CIL_0005DJ CIL_0005DJ_0001 CGP 22:38468062-38507660
CIL_0005DK CIL_0005DK_0001 CGP 22:38483440-38570286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003713 IDA transcription coactivator activity
GO:0003723 TAS RNA binding
GO:0003724 TAS RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008186 TAS RNA-dependent ATPase activity
GO:0016020 IDA membrane
GO:0030331 IDA estrogen receptor binding
GO:0033148 IDA positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:2001014 IMP regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054014 Ddx17-201 protein_coding Mus_musculus 0 2935

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