C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box helicase 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100201 DDX17 9606 - 22:38483440-38507660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216019 DDX17-003 38485681-38506294 retained_intron
  ENST00000396821 DDX17-001 38483440-38506337 protein_coding
  ENST00000403230 DDX17-002 38485878-38506312 protein_coding
  ENST00000431312 DDX17-011 38485677-38488961 retained_intron
  ENST00000432525 DDX17-005 38490313-38507660 processed_transcript
  ENST00000467279 DDX17-006 38498553-38505901 processed_transcript
  ENST00000475004 DDX17-010 38489177-38493771 processed_transcript
  ENST00000477112 DDX17-008 38494310-38495046 retained_intron
  ENST00000479734 DDX17-004 38505165-38506306 processed_transcript
  ENST00000497196 DDX17-007 38493361-38495046 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216019ENST00000396821ENST00000403230ENST00000432525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216019 N/A N/A 12.776±0.00 N/A 8.109±0.00 10.945±0.00 N/A N/A 12.893±0.00 N/A 3.508±0.00 16.724±0.00 N/A N/A
ENST00000396821 9.675±0.00 14.022±0.00 27.513±0.00 18.714±3.09 40.112±0.82 34.679±8.54 12.908±4.69 14.573±6.70 21.433±10.15 22.035±5.78 14.602±6.19 72.707±23.44 20.478±7.61 15.906±1.51
ENST00000403230 N/A N/A N/A N/A 18.842±0.00 N/A 16.848±0.00 16.661±0.00 48.759±0.00 N/A 17.976±0.00 39.176±0.00 N/A N/A
ENST00000432525 N/A N/A N/A N/A 33.927±0.00 44.747±0.00 N/A N/A N/A 57.815±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DI CIL_0005DI_0001 CGP 22:38426327-38483447
CIL_0005DJ CIL_0005DJ_0001 CGP 22:38468062-38507660
CIL_0005DK CIL_0005DK_0001 CGP 22:38483440-38570286

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003713 IDA transcription coactivator activity
GO:0003723 TAS RNA binding
GO:0003724 TAS RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008186 TAS RNA-dependent ATPase activity
GO:0009791 IEA post-embryonic development
GO:0016020 IDA membrane
GO:0030331 IDA estrogen receptor binding
GO:0033148 IDA positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0072358 IEA cardiovascular system development
GO:2001014 IMP regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010873 DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 protein_coding Danio_rerio
ENSMUSG00000055065 Ddx17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 protein_coding Mus_musculus

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