C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aryl hydrocarbon receptor nuclear translocator-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403290 ARNTL-004 ENSG00000133794 9606 + 11:13277831-13387266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000403290
Transcript ID Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000403290 1.365±0.00 3.167±0.00 0.589±0.00 0.563±0.00 2.477±1.87 1.680±0.00 3.727±0.00 1.851±1.04 0.535±0.00 2.118±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PI CIL_0003PI_0001 CGP 11:13009577-13387266
CIL_0003PJ CIL_0003PJ_0001 CGP 11:13276652-13463297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000060 IEA protein import into nucleus, translocation
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0000982 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0001047 ISS core promoter binding
GO:0001190 IEA RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006355 ISS:IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0007283 ISS spermatogenesis
GO:0007623 TAS circadian rhythm
GO:0016604 IEA nuclear body
GO:0017162 IPI aryl hydrocarbon receptor binding
GO:0032007 ISS negative regulation of TOR signaling
GO:0032922 ISS circadian regulation of gene expression
GO:0033391 ISS chromatoid body
GO:0042176 IEA regulation of protein catabolic process
GO:0042634 IMP regulation of hair cycle
GO:0042753 ISS positive regulation of circadian rhythm
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043425 IEA bHLH transcription factor binding
GO:0043565 ISS sequence-specific DNA binding
GO:0045599 ISS negative regulation of fat cell differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0050767 ISS regulation of neurogenesis
GO:0050796 ISS regulation of insulin secretion
GO:0051726 ISS regulation of cell cycle
GO:0051775 IDA response to redox state
GO:0051879 IDA Hsp90 protein binding
GO:0070888 IDA E-box binding
GO:0090263 ISS positive regulation of canonical Wnt signaling pathway
GO:0090403 ISS oxidative stress-induced premature senescence
GO:2000074 ISS regulation of type B pancreatic cell development
GO:2000323 ISS negative regulation of glucocorticoid receptor signaling pathway
GO:2000772 ISS regulation of cellular senescence
GO:2001016 ISS positive regulation of skeletal muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047321 Arntl-201 protein_coding Mus_musculus 0 3393
ENSDART00000051823 arntl1b-201 protein_coding Danio_rerio 0 682
ENSDART00000098259 arntl1b-202 protein_coding Danio_rerio 0 682
ENSDART00000139227 arntl1b-001 protein_coding Danio_rerio 0 682
ENSDART00000104523 arntl1b-002 protein_coding Danio_rerio 0 682

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