C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: all-trans retinoic acid-induced differentiation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405489 ATRAID-002 ENSG00000138085 9606 + 2:27212370-27217178 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000405489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000405489 18.361±0.00 21.677±0.00 2.041±0.00 7.053±0.10 16.275±0.00 10.735±5.80 8.728±5.34 9.341±5.41 3.114±0.00 5.879±3.52 8.943±4.86 32.698±2.15 22.688±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EJ CIL_0000EJ_0001 CGP 2:27149004-27212958
CIL_0000EI CIL_0000EI_0001 CGP 2:27199587-27217178
CIL_0000EH CIL_0000EH_0001 CGP 2:27212027-27243943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005886 IEA plasma membrane
GO:0010468 IDA regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030501 IDA positive regulation of bone mineralization
GO:0033689 IDA negative regulation of osteoblast proliferation
GO:0045669 IDA positive regulation of osteoblast differentiation
GO:0048471 IDA perinuclear region of cytoplasm
GO:2000599 IDA negative regulation of cyclin catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000013766 Atraid-001 protein_coding Mus_musculus 0 566
ENSMUST00000114659 Atraid-005 protein_coding Mus_musculus 0 562
ENSMUST00000114660 Atraid-002 nonsense_mediated_decay Mus_musculus 0 481
ENSMUST00000153643 Atraid-006 protein_coding Mus_musculus 0 438
ENSMUST00000138309 Atraid-004 retained_intron Mus_musculus 0 340
ENSMUST00000133215 Atraid-007 processed_transcript Mus_musculus 0 274
ENSMUST00000130250 Atraid-003 protein_coding Mus_musculus 0 235
ENSMUST00000173215 Atraid-008 protein_coding Mus_musculus 1e-32 145

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