C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406316 NRXN1-001 ENSG00000179915 9606 - 2:49920350-51032536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonMuscleOvaryENST00000406316
Transcript ID Adrenal Colon Muscle Ovary
ENST00000406316 0.018±0.00 1.067±0.00 0.007±0.00 0.074±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005246 ISS calcium channel regulator activity
GO:0005509 ISS calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005886 ISS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007158 TAS neuron cell-cell adhesion
GO:0007268 ISS synaptic transmission
GO:0007269 ISS neurotransmitter secretion
GO:0007411 TAS axon guidance
GO:0007416 ISS synapse assembly
GO:0007612 IMP learning
GO:0009986 IDA cell surface
GO:0030054 IEA cell junction
GO:0030198 TAS extracellular matrix organization
GO:0030534 IMP adult behavior
GO:0033130 ISS acetylcholine receptor binding
GO:0035176 IMP social behavior
GO:0042297 IMP vocal learning
GO:0042734 ISS presynaptic membrane
GO:0050839 ISS cell adhesion molecule binding
GO:0050885 ISS neuromuscular process controlling balance
GO:0051965 ISS positive regulation of synapse assembly
GO:0051968 ISS positive regulation of synaptic transmission, glutamatergic
GO:0071625 IMP vocalization behavior
GO:0090129 ISS positive regulation of synapse maturation
GO:0097104 ISS postsynaptic membrane assembly
GO:0097109 ISS neuroligin family protein binding
GO:0097116 ISS gephyrin clustering
GO:0097118 ISS neuroligin clustering
GO:0097119 ISS postsynaptic density protein 95 clustering
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174331 Nrxn1-015 protein_coding Mus_musculus 0 6200
ENSMUST00000160844 Nrxn1-001 protein_coding Mus_musculus 0 5426
ENSMUST00000161102 Nrxn1-013 retained_intron Mus_musculus 0 5271
ENSMUST00000160800 Nrxn1-014 protein_coding Mus_musculus 0 5199
ENSMUST00000161402 Nrxn1-011 protein_coding Mus_musculus 0 5108
ENSMUST00000072671 Nrxn1-002 protein_coding Mus_musculus 0 5051
ENSMUST00000054059 Nrxn1-020 protein_coding Mus_musculus 0 5051
ENSMUST00000159778 Nrxn1-009 protein_coding Mus_musculus 0 3892
ENSMUST00000161637 Nrxn1-004 processed_transcript Mus_musculus 0 3393
ENSMUST00000174337 Nrxn1-016 protein_coding Mus_musculus 0 1495
ENSDART00000088178 nrxn1a-201 protein_coding Danio_rerio 0 1386
ENSDART00000093094 nrxn1a-001 protein_coding Danio_rerio 0 1386
ENSDART00000111239 nrxn1a-202 protein_coding Danio_rerio 0 1356
ENSMUST00000162002 Nrxn1-007 retained_intron Mus_musculus 0 1280
ENSMUST00000159419 Nrxn1-003 retained_intron Mus_musculus 0 1280
ENSMUST00000160467 Nrxn1-006 retained_intron Mus_musculus 0 1280
ENSMUST00000172466 Nrxn1-017 protein_coding Mus_musculus 0 1000
ENSDART00000149547 nrxn1b-001 protein_coding Danio_rerio 0 905
ENSMUST00000173222 Nrxn1-005 processed_transcript Mus_musculus 0 710
ENSMUST00000176118 Nrxn1-012 protein_coding Mus_musculus 0 676
ENSMUST00000177342 Nrxn1-018 protein_coding Mus_musculus 0 654
ENSMUST00000173917 Nrxn1-010 protein_coding Mus_musculus 0 630
ENSMUST00000162227 Nrxn1-008 retained_intron Mus_musculus 0 464
ENSDART00000090934 nrxn3b-202 protein_coding Danio_rerio 0 453
ENSDART00000127050 nrxn3b-203 protein_coding Danio_rerio 0 453
ENSDART00000090646 nrxn3b-201 protein_coding Danio_rerio 0 444
ENSDART00000149694 nrxn3b-001 protein_coding Danio_rerio 0 416
ENSMUST00000095183 Gm10308-201 protein_coding Mus_musculus 0 379
ENSMUST00000176918 Nrxn1-019 processed_transcript Mus_musculus 0 270

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