C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 49, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406434 FAM49A-002 ENSG00000197872 9606 - 2:16552936-16665828 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLungOvaryPlacentaTestisENST00000406434
Transcript ID Bladder Lung Ovary Placenta Testis
ENST00000406434 0.229±0.00 6.001±0.00 0.298±0.00 3.033±0.00 0.389±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094N CIL_00094N_0001 VISTA 2:16454785-17055066

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IDA intracellular

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069005 Fam49a-201 protein_coding Mus_musculus 0 1291
ENSMUST00000069066 Fam49a-202 protein_coding Mus_musculus 0 1291
ENSDART00000002773 znf395-001 protein_coding Danio_rerio 0 627
ENSDART00000062791 znf395-201 protein_coding Danio_rerio 0 621
ENSDART00000137915 znf395-002 protein_coding Danio_rerio 0 564
ENSDART00000153070 znf395-006 retained_intron Danio_rerio 0 416
ENSDART00000153332 znf395-005 nonsense_mediated_decay Danio_rerio 0 348
ENSDART00000039717 fam49ba-001 protein_coding Danio_rerio 0 320
ENSDART00000145648 fam49ba-003 processed_transcript Danio_rerio 0 233
ENSDART00000056621 fam49ba-201 protein_coding Danio_rerio 5e-37 159
ENSDART00000146452 fam49ba-005 protein_coding Danio_rerio 5e-37 159
ENSDART00000141418 fam49ba-002 protein_coding Danio_rerio 5e-37 159

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