C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptonemal complex central element protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406915 SYCE3-002 ENSG00000217442 9606 - 22:50551112-50562905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLungOvaryPlacentaTestisENST00000406915
Transcript ID Adipose Bladder Brain Breast Heart Kidney Lung Ovary Placenta Testis
ENST00000406915 0.207±0.00 0.264±0.00 0.816±0.00 0.269±0.00 0.125±0.00 0.475±0.00 0.339±0.00 0.376±0.09 0.601±0.00 96.275±43.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MI CIL_0003MI_0001 CGP 22:50548033-50562905
CIL_00028I CIL_00028I_0001 CGP 22:50551112-50578465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000801 ISS central element
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005694 ISS chromosome
GO:0007130 ISS synaptonemal complex assembly
GO:0007131 ISS reciprocal meiotic recombination
GO:0007283 ISS spermatogenesis
GO:0043065 IEA positive regulation of apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109314 Syce3-002 protein_coding Mus_musculus 0 327
ENSMUST00000167959 Syce3-001 protein_coding Mus_musculus 0 311

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