C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000408931 TBX20-001 ENSG00000164532 9606 - 7:35202430-35254147 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverPlacentaTestisENST00000408931
Transcript ID Heart Liver Placenta Testis
ENST00000408931 3.811±1.42 0.024±0.00 0.429±0.30 0.319±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SV CIL_0008SV_0001 VISTA 7:34897251-35498313
CIL_0008SU CIL_0008SU_0001 VISTA 7:34914906-35515639
CIL_00091I CIL_00091I_0001 VISTA 7:34928902-35529768
CIL_00091J CIL_00091J_0001 VISTA 7:34935659-35536509
CIL_00091K CIL_00091K_0001 VISTA 7:34980510-35581474
CIL_00091G CIL_00091G_0001 VISTA 7:34991564-35592509
CIL_0008SW CIL_0008SW_0001 VISTA 7:35002867-35603499
CIL_00091H CIL_00091H_0001 VISTA 7:35019394-35620244
CIL_0008SR CIL_0008SR_0001 VISTA 7:35048704-35649425
CIL_0009CB CIL_0009CB_0001 VISTA 7:35073081-35676867
CIL_00084T CIL_00084T_0001 VISTA 7:35073115-35676739
CIL_00091N CIL_00091N_0001 VISTA 7:35115190-35716608
CIL_0008SX CIL_0008SX_0001 VISTA 7:35118941-35719912
CIL_00091M CIL_00091M_0001 VISTA 7:35165574-35766732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085 ISS RNA polymerase II transcription factor binding
GO:0001102 ISS RNA polymerase II activating transcription factor binding
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0001569 IEA patterning of blood vessels
GO:0001706 ISS endoderm formation
GO:0001764 IEA neuron migration
GO:0001947 ISS heart looping
GO:0003143 ISS embryonic heart tube morphogenesis
GO:0003148 IMP outflow tract septum morphogenesis
GO:0003151 IEA outflow tract morphogenesis
GO:0003175 ISS tricuspid valve development
GO:0003176 IEA aortic valve development
GO:0003180 IMP aortic valve morphogenesis
GO:0003193 ISS pulmonary valve formation
GO:0003203 ISS endocardial cushion morphogenesis
GO:0003207 ISS cardiac chamber formation
GO:0003215 ISS cardiac right ventricle morphogenesis
GO:0003272 ISS endocardial cushion formation
GO:0003279 ISS cardiac septum development
GO:0003344 ISS pericardium morphogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS:IEA nucleus
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006936 IEA muscle contraction
GO:0008015 IEA blood circulation
GO:0008283 IEA cell proliferation
GO:0009953 ISS dorsal/ventral pattern formation
GO:0010991 IEA negative regulation of SMAD protein complex assembly
GO:0021524 ISS visceral motor neuron differentiation
GO:0035050 IEA embryonic heart tube development
GO:0035922 IMP foramen ovale closure
GO:0036306 IEA embryonic heart tube elongation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048370 ISS lateral mesoderm formation
GO:0055008 ISS cardiac muscle tissue morphogenesis
GO:0060045 ISS positive regulation of cardiac muscle cell proliferation
GO:0060413 IMP atrial septum morphogenesis
GO:0060577 IMP pulmonary vein morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052946 Tbx20-201 protein_coding Mus_musculus 0 1768
ENSMUST00000166018 Tbx20-202 protein_coding Mus_musculus 0 1221

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