C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated, serine-rich 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409140 SPATS2L-005 ENSG00000196141 9606 + 2:200306708-200478530 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaENST00000409140
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENST00000409140 1.666±0.00 2.542±0.00 4.304±0.00 1.043±0.00 3.284±0.00 2.066±0.00 3.821±0.00 5.997±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B1 CIL_0002B1_0001 CGP 2:199955317-200482263
CIL_0002B2 CIL_0002B2_0001 CGP 2:200305881-200519784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170139 Spats2l-012 protein_coding Mus_musculus 0 2532
ENSMUST00000169772 Spats2l-002 protein_coding Mus_musculus 0 2470
ENSMUST00000167085 Spats2l-001 protein_coding Mus_musculus 0 2455
ENSMUST00000163239 Spats2l-010 protein_coding Mus_musculus 0 2409
ENSMUST00000164302 Spats2l-011 protein_coding Mus_musculus 0 1633
ENSMUST00000172068 Spats2l-006 protein_coding Mus_musculus 0 876
ENSMUST00000171699 Spats2l-014 protein_coding Mus_musculus 0 542
ENSMUST00000167971 Spats2l-008 protein_coding Mus_musculus 0 449
ENSMUST00000164353 Spats2l-015 retained_intron Mus_musculus 0 433
ENSMUST00000172287 Spats2l-005 protein_coding Mus_musculus 0 385
ENSMUST00000168905 Spats2l-007 retained_intron Mus_musculus 0 228

Loading