C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002B1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162972-ENSG00000196141 CGP 9606 2:199955317-200482263
GeneTranscriptPositionBiotype
ENSG00000162971 (TYW5)
tRNA-yW synthesizing protein 5 		ENST00000354611 (TYW5-001) 199929975-199955736 protein_coding
ENST00000441832 (TYW5-003) 199931899-199955503 nonsense_mediated_decay
ENST00000452512 (TYW5-002) 199931333-199955500 processed_transcript
ENST00000483328 (TYW5-005) 199929975-199955736 nonsense_mediated_decay
ENST00000493181 (TYW5-004) 199942058-199955502 retained_intron
ENSG00000162972 (C2orf47)
chromosome 2 open reading frame 47 		ENST00000295079 (C2orf47-201) 199955317-199964108 protein_coding
ENST00000392290 (C2orf47-001) 199955603-199964125 protein_coding
ENST00000435773 (C2orf47-003) 199955821-200008540 protein_coding
ENST00000469156 (C2orf47-002) 199959266-199963836 processed_transcript
ENSG00000178074 (C2orf69)
chromosome 2 open reading frame 69 		ENST00000319974 (C2orf69-001) 199911256-199928273 protein_coding
ENST00000491721 (C2orf69-002) 199911306-199955935 processed_transcript
ENSG00000196141 (SPATS2L)
spermatogenesis associated, serine-rich 2-like 		ENST00000358677 (SPATS2L-001) 200305986-200482263 protein_coding
ENST00000360760 (SPATS2L-008) 200306524-200478530 protein_coding
ENST00000366118 (SPATS2L-026) 200440649-200461337 protein_coding
ENST00000409140 (SPATS2L-005) 200306708-200478530 protein_coding
ENST00000409151 (SPATS2L-010) 200351189-200478209 protein_coding
ENST00000409385 (SPATS2L-003) 200306159-200478529 protein_coding
ENST00000409397 (SPATS2L-023) 200306872-200469960 protein_coding
ENST00000409718 (SPATS2L-002) 200305893-200478530 protein_coding
ENST00000409755 (SPATS2L-201) 200306708-200478529 protein_coding
ENST00000409988 (SPATS2L-004) 200306151-200478529 protein_coding
ENST00000421573 (SPATS2L-019) 200378005-200439139 protein_coding
ENST00000423749 (SPATS2L-016) 200306553-200419470 protein_coding
ENST00000428692 (SPATS2L-017) 200306554-200389283 protein_coding
ENST00000438761 (SPATS2L-021) 200393077-200467378 protein_coding
ENST00000439084 (SPATS2L-011) 200305881-200419333 protein_coding
ENST00000439395 (SPATS2L-012) 200306276-200419397 protein_coding
ENST00000444012 (SPATS2L-013) 200306283-200412342 protein_coding
ENST00000449647 (SPATS2L-022) 200378237-200440724 protein_coding
ENST00000451764 (SPATS2L-014) 200306376-200478102 protein_coding
ENST00000453663 (SPATS2L-020) 200306568-200440784 protein_coding
ENST00000457757 (SPATS2L-015) 200306554-200439240 protein_coding
ENST00000459656 (SPATS2L-006) 200306718-200390868 retained_intron
ENST00000460095 (SPATS2L-025) 200469914-200478146 processed_transcript
ENST00000462190 (SPATS2L-024) 200469740-200477882 retained_intron
ENST00000468832 (SPATS2L-027) 200463253-200473047 processed_transcript
ENST00000471533 (SPATS2L-018) 200306727-200372191 processed_transcript
ENST00000471601 (SPATS2L-009) 200306554-200390854 retained_intron
ENST00000619961 (SPATS2L-202) 200308950-200482256 protein_coding
ENSG00000201649 (RNY4P34)
RNA, Ro-associated Y4 pseudogene 34 		ENST00000364779 (RNY4P34-201) 200373175-200373269 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002B1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025971-ENSMUSG00000038305 CGP 10090 1:57406328-57948394
GeneTranscriptPositionBiotype
ENSMUSG00000025971 (9430016H08Rik)
RIKEN cDNA 9430016H08 gene 		ENSMUST00000027114 (9430016H08Rik-001) 57406328-57417953 protein_coding
ENSMUST00000185709 (9430016H08Rik-003) 57406759-57411632 retained_intron
ENSMUSG00000038305 (Spats2l)
spermatogenesis associated, serine-rich 2-like 		ENSMUST00000163239 (Spats2l-010) 57774365-57946964 protein_coding
ENSMUST00000163922 (Spats2l-004) 57774419-57800438 retained_intron
ENSMUST00000164302 (Spats2l-011) 57774755-57946965 protein_coding
ENSMUST00000164353 (Spats2l-015) 57902071-57940374 retained_intron
ENSMUST00000165235 (Spats2l-013) 57774912-57832306 retained_intron
ENSMUST00000167085 (Spats2l-001) 57774861-57948394 protein_coding
ENSMUST00000167971 (Spats2l-008) 57774600-57885836 protein_coding
ENSMUST00000168016 (Spats2l-003) 57774890-57857541 retained_intron
ENSMUST00000168895 (Spats2l-009) 57774917-57799580 retained_intron
ENSMUST00000168905 (Spats2l-007) 57774249-57879723 retained_intron
ENSMUST00000169772 (Spats2l-002) 57845571-57946965 protein_coding
ENSMUST00000170139 (Spats2l-012) 57774735-57946965 protein_coding
ENSMUST00000171699 (Spats2l-014) 57774744-57938021 protein_coding
ENSMUST00000172068 (Spats2l-006) 57774301-57902109 protein_coding
ENSMUST00000172287 (Spats2l-005) 57774162-57885768 protein_coding
ENSMUSG00000048495 (Tyw5)
tRNA-yW synthesizing protein 5 		ENSMUST00000079998 (Tyw5-004) 57388240-57406674 nonsense_mediated_decay
ENSMUST00000097732 (Tyw5-002) 57388240-57406471 retained_intron
ENSMUST00000160118 (Tyw5-006) 57391429-57406471 nonsense_mediated_decay
ENSMUST00000160837 (Tyw5-007) 57388666-57406443 protein_coding
ENSMUST00000161092 (Tyw5-008) 57388686-57391740 retained_intron
ENSMUST00000161727 (Tyw5-010) 57388416-57393698 retained_intron
ENSMUST00000161780 (Tyw5-003) 57393321-57406537 protein_coding
ENSMUST00000162663 (Tyw5-011) 57388405-57390771 processed_transcript
ENSMUST00000162686 (Tyw5-001) 57388237-57407101 protein_coding
ENSMUST00000163039 (Tyw5-009) 57390712-57401522 processed_transcript
ENSMUSG00000091283 (Gm17234)
predicted gene 17234 		ENSMUST00000172128 (Gm17234-001) 57909835-57917111 antisense
ENSMUSG00000101151 (RP23-433B11.3)
predicted gene, 17929 		ENSMUST00000186851 (RP23-433B11.3-001) 57561298-57564051 processed_pseudogene
ENSMUSG00000101826 (RP23-433B11.2)
predicted gene 8581 		ENSMUST00000188636 (RP23-433B11.2-001) 57518523-57519412 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B1_0001ENSG00000162971ENST00000354611ENST00000441832ENST00000483328ENST00000493181ENSG00000162972ENST00000295079ENST00000392290ENSG00000178074ENST00000319974ENSG00000196141ENST00000358677ENST00000360760ENST00000409140ENST00000409385ENST00000409397ENST00000409755ENST00000409988ENST00000453663ENST00000460095ENST00000468832ENST00000619961ENSG00000201649ENST00000364779CIL_0002B1_0002ENSMUSG00000025971ENSMUST00000027114ENSMUST00000185709ENSMUSG00000038305ENSMUST00000163239ENSMUST00000163922ENSMUST00000164302ENSMUST00000164353ENSMUST00000165235ENSMUST00000167085ENSMUST00000167971ENSMUST00000168016ENSMUST00000168905ENSMUST00000169772ENSMUST00000170139ENSMUST00000172068ENSMUSG00000048495ENSMUST00000079998ENSMUST00000097732ENSMUST00000162663ENSMUSG00000091283ENSMUST00000172128ENSMUSG00000101151ENSMUST00000186851ENSMUSG00000101826ENSMUST00000188636
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162971 ENST00000354611 N/A N/A N/A N/A N/A N/A N/A 1.018±0.00 N/A N/A N/A 0.804±0.04 0.375±0.00 N/A
ENST00000441832 N/A N/A N/A N/A N/A 1.750±0.00 N/A N/A N/A 1.672±0.00 N/A 2.705±0.83 0.833±0.00 2.159±0.00
ENST00000452512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483328 N/A N/A N/A N/A 0.768±0.00 N/A N/A N/A 0.836±0.00 0.784±0.00 N/A 0.848±0.00 N/A N/A
ENST00000493181 N/A 0.751±0.00 0.457±0.00 N/A 0.694±0.00 0.846±0.00 0.273±0.00 N/A 0.445±0.00 0.893±0.00 N/A 0.567±0.00 N/A N/A
ENSG00000162972 ENST00000295079 N/A N/A N/A N/A N/A N/A N/A N/A 16.511±0.00 4.289±0.00 2.758±0.00 3.352±0.00 N/A N/A
ENST00000392290 5.954±0.00 4.314±0.00 2.684±0.00 N/A 2.699±0.00 4.526±1.24 4.226±2.57 10.057±1.77 N/A N/A 3.287±0.79 7.247±0.12 6.263±1.52 4.655±1.56
ENST00000435773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178074 ENST00000319974 6.303±0.00 3.768±0.00 1.883±0.00 10.405±1.82 5.573±2.32 2.873±0.04 2.327±0.99 2.970±1.53 2.893±0.41 2.841±0.14 1.547±0.60 3.173±0.98 1.362±0.17 5.455±1.46
ENST00000491721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196141 ENST00000358677 3.968±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000360760 8.356±0.00 8.750±0.00 3.146±0.00 8.123±1.51 7.657±1.56 10.908±6.84 9.505±7.62 14.064±5.53 9.433±3.02 9.197±5.46 6.231±0.00 17.413±13.52 12.954±0.28 15.682±0.00
ENST00000366118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409140 N/A N/A 1.666±0.00 2.542±0.00 N/A 4.304±0.00 1.043±0.00 3.284±0.00 2.066±0.00 N/A N/A 3.821±0.00 5.997±0.00 N/A
ENST00000409151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409385 N/A N/A N/A 2.345±0.00 N/A N/A N/A N/A N/A N/A 1.564±0.00 N/A N/A N/A
ENST00000409397 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.329±0.00 N/A N/A N/A N/A
ENST00000409718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409755 N/A N/A N/A 5.610±0.00 N/A 7.858±0.00 4.624±3.47 6.171±2.88 3.581±0.00 8.131±0.00 2.167±0.00 12.242±6.41 9.675±3.58 11.961±0.07
ENST00000409988 N/A N/A 1.475±0.00 N/A N/A N/A N/A 2.592±0.00 N/A 1.768±0.00 N/A 4.162±0.00 N/A N/A
ENST00000421573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453663 N/A N/A 4.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.183±0.00 N/A
ENST00000457757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460095 17.889±0.00 15.354±0.00 N/A 16.921±0.00 N/A 20.256±0.00 22.173±0.00 23.576±0.00 13.626±0.00 24.408±0.00 7.541±2.15 N/A N/A 28.650±0.00
ENST00000462190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.586±0.00 N/A
ENST00000471533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619961 N/A N/A N/A N/A N/A N/A 0.385±0.00 N/A 0.752±0.00 1.190±0.00 N/A N/A N/A N/A
ENSG00000201649 ENST00000364779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.966±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025971 ENSMUST00000027114 4.180±1.70 5.756±2.15 4.400±1.34 4.966±0.65 3.702±1.79 2.990±1.01 2.445±0.24 3.030±1.81 3.434±1.44 3.046±0.96 3.455±0.35 3.564±1.85 6.301±1.77 1.920±0.30
ENSMUST00000185709 0.887±0.20 3.521±2.23 N/A N/A 1.103±0.58 N/A 0.311±0.00 N/A N/A 0.995±0.11 N/A 1.889±1.87 0.780±0.00 N/A
ENSMUSG00000038305 ENSMUST00000163239 N/A N/A N/A 3.734±0.00 N/A N/A 0.556±0.07 1.397±0.52 0.554±0.04 1.312±0.21 0.198±0.07 1.636±0.00 1.179±0.51 N/A
ENSMUST00000163922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00
ENSMUST00000164302 1.572±0.98 N/A 3.477±0.18 4.110±0.00 0.502±0.00 1.559±0.21 1.056±0.16 1.670±0.21 0.470±0.31 1.507±0.24 0.195±0.07 1.835±1.00 1.681±0.25 0.212±0.00
ENSMUST00000164353 N/A N/A N/A 24.758±0.00 N/A N/A N/A N/A N/A N/A N/A 24.580±0.00 11.420±5.76 N/A
ENSMUST00000165235 N/A 3.784±0.61 N/A N/A 2.387±0.42 N/A N/A N/A N/A 3.825±0.00 N/A 5.267±1.57 N/A N/A
ENSMUST00000167085 2.707±1.51 0.388±0.14 4.693±0.11 2.892±1.87 1.108±0.38 1.841±0.36 0.735±0.07 1.563±0.31 0.469±0.41 2.795±0.34 0.192±0.06 2.149±1.00 1.311±0.84 0.066±0.00
ENSMUST00000167971 N/A N/A N/A 5.449±0.00 1.351±0.00 2.344±0.00 N/A N/A N/A N/A N/A 3.328±0.00 2.330±0.29 0.353±0.00
ENSMUST00000168016 N/A 0.314±0.01 N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A 0.045±0.00
ENSMUST00000168895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00
ENSMUST00000169772 N/A N/A 2.450±0.00 2.599±0.55 N/A 1.693±0.44 N/A 1.497±0.00 1.134±0.66 N/A 0.297±0.00 2.077±0.91 3.688±1.84 0.122±0.00
ENSMUST00000170139 2.613±0.00 N/A 3.039±0.52 6.529±1.97 N/A 0.970±0.11 0.610±0.05 N/A N/A N/A 0.192±0.08 2.344±0.00 N/A 0.184±0.00
ENSMUST00000171699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172068 N/A N/A N/A N/A N/A N/A 1.012±0.00 N/A N/A N/A N/A N/A N/A 0.265±0.00
ENSMUST00000172287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048495 ENSMUST00000079998 N/A N/A N/A N/A N/A N/A N/A N/A 3.378±0.31 N/A 1.444±0.00 3.156±0.15 6.093±1.00 N/A
ENSMUST00000097732 N/A N/A 5.383±1.66 2.948±0.23 N/A N/A N/A N/A N/A N/A N/A 1.807±0.04 2.969±0.00 N/A
ENSMUST00000160118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162663 N/A N/A N/A 24.077±0.00 9.010±0.00 N/A N/A N/A 5.885±0.46 N/A N/A 26.167±0.00 45.003±4.59 6.323±0.00
ENSMUST00000162686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000091283 ENSMUST00000172128 0.146±0.00 0.365±0.00 0.276±0.00 N/A N/A 0.313±0.00 N/A N/A 0.255±0.00 N/A N/A 0.791±0.38 0.199±0.00 N/A
ENSMUSG00000101151 ENSMUST00000186851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUSG00000101826 ENSMUST00000188636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.02

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