C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syncoilin, intermediate filament protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409190 SYNC-001 ENSG00000162520 9606 - 1:32680360-32703119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000409190
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000409190 2.181±0.00 2.259±0.00 6.709±0.00 2.874±1.74 6.497±0.00 2.424±0.00 6.763±0.00 3.188±0.00 2.756±0.00 6.574±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005882 IEA intermediate filament
GO:0030018 IEA Z disc
GO:0031594 IEA neuromuscular junction
GO:0042383 IEA sarcolemma
GO:0045103 IEA intermediate filament-based process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102598 Rbbp4-001 protein_coding Mus_musculus 0 479
ENSMUST00000140291 Rbbp4-004 processed_transcript Mus_musculus 0 348
ENSMUST00000102599 Sync-001 protein_coding Mus_musculus 0 195
ENSMUST00000146448 Sync-002 retained_intron Mus_musculus 3.99931e-42 178

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