C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102598 Rbbp4-001 ENSMUSG00000057236 10090 - 4:129307100-129335370 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102598
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102598 31.128±9.59 19.134±1.34 32.529±3.57 32.929±19.16 23.672±2.34 19.273±2.26 16.362±1.64 23.842±1.52 28.519±18.26 22.838±1.11 10.568±0.51 25.505±6.05 18.972±10.38 26.453±11.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A9 CIL_0002A9_0002 CGP 4:129219578-129308559
CIL_0002A8 CIL_0002A8_0002 CGP 4:129287617-129335370

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006338 TAS:ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008094 ISS DNA-dependent ATPase activity
GO:0016581 IDA NuRD complex
GO:0016589 IEA NURF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0031497 ISS chromatin assembly
GO:0033186 ISS CAF-1 complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042826 IEA histone deacetylase binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081335 rbb4l-002 protein_coding Danio_rerio 0 880
ENSDART00000131059 rbb4l-202 protein_coding Danio_rerio 0 870
ENSDART00000008144 rbb4l-201 protein_coding Danio_rerio 0 870
ENSDART00000142481 rbb4l-001 protein_coding Danio_rerio 0 870
ENSDART00000136331 rbb4l-003 processed_transcript Danio_rerio 1e-32 147
ENST00000373485 RBBP4-002 protein_coding Homo_sapiens 0 1757
ENST00000373493 RBBP4-001 protein_coding Homo_sapiens 0 1991
ENST00000398583 RBBP4P5-001 processed_pseudogene Homo_sapiens 0 1465
ENST00000398588 RBBP4P4-001 processed_pseudogene Homo_sapiens 0 1511
ENST00000401893 RBBP4-017 retained_intron Homo_sapiens 0 743
ENST00000409190 SYNC-001 protein_coding Homo_sapiens 0 479
ENST00000414241 RBBP4-011 protein_coding Homo_sapiens 0 1978
ENST00000445722 RBBP4-013 protein_coding Homo_sapiens 0 501
ENST00000458695 RBBP4-003 protein_coding Homo_sapiens 0 1892
ENST00000460669 RBBP4-009 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000463378 RBBP4-008 protein_coding Homo_sapiens 0 719
ENST00000465780 RBBP4-005 retained_intron Homo_sapiens 0 292
ENST00000475321 RBBP4-007 protein_coding Homo_sapiens 0 771
ENST00000477563 RBBP4-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000478252 RBBP4P2-001 processed_pseudogene Homo_sapiens 0 1557
ENST00000482190 RBBP4-010 protein_coding Homo_sapiens 0 691
ENST00000490500 RBBP4-004 protein_coding Homo_sapiens 0 412
ENST00000492348 RBBP4-019 nonsense_mediated_decay Homo_sapiens 0 1247
ENST00000502424 RBBP4P1-001 processed_pseudogene Homo_sapiens 0 1653
ENST00000524393 RBBP4-015 processed_transcript Homo_sapiens 0 448
ENST00000525506 RBBP4-020 retained_intron Homo_sapiens 0 484
ENST00000526193 RBBP4-016 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000527118 RBBP4-014 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000531983 RBBP4-018 retained_intron Homo_sapiens 0 422
ENST00000619705 RBBP4P3-001 processed_pseudogene Homo_sapiens 0 1506

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