C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: capping protein (actin filament), gelsolin-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409724 CAPG-002 ENSG00000042493 9606 - 2:85394893-85414074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409724
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409724 7.451±0.00 18.685±0.00 1.931±0.00 8.618±0.00 16.098±13.25 3.688±2.15 0.693±0.00 48.543±0.00 1.028±0.00 19.745±15.63 2.287±0.00 38.056±45.55 30.481±0.00 10.904±3.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AX CIL_0009AX_0001 VISTA 2:84977509-85579132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006461 NAS protein complex assembly
GO:0008290 TAS F-actin capping protein complex
GO:0031965 IDA nuclear membrane
GO:0051016 TAS barbed-end actin filament capping
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114072 Capg-002 protein_coding Mus_musculus 0 1317
ENSMUST00000114071 Capg-001 protein_coding Mus_musculus 0 1315
ENSMUST00000071044 Capg-003 protein_coding Mus_musculus 0 1315
ENSMUST00000126101 Capg-009 protein_coding Mus_musculus 0 966
ENSMUST00000126124 Capg-006 protein_coding Mus_musculus 0 745
ENSMUST00000120648 5730416F02Rik-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000155188 Capg-005 protein_coding Mus_musculus 0 654
ENSMUST00000137435 Capg-011 retained_intron Mus_musculus 0 479
ENSMUST00000127770 Capg-012 retained_intron Mus_musculus 0 394
ENSMUST00000155705 Capg-007 protein_coding Mus_musculus 0 394
ENSMUST00000134809 Capg-008 protein_coding Mus_musculus 0 339

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