C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: T-box, brain, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411412 TBR1-006 ENSG00000136535 9606 + 2:161417779-161423776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000411412
Transcript ID Ovary
ENST00000411412 0.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JH CIL_0008JH_0001 VISTA 2:160938384-161538940
CIL_0005L1 CIL_0005L1_0001 CGP 2:161308038-161425870
CIL_0003AH CIL_0003AH_0001 CGP 2:161416094-161985282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048934 Tbr1-001 protein_coding Mus_musculus 0 771
ENSMUST00000102737 Tbr1-002 protein_coding Mus_musculus 0 688
ENSMUST00000131538 Tbr1-003 processed_transcript Mus_musculus 0 684

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