C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411546 SMG1P5-003 ENSG00000183604 9606 - 16:30285023-30335374 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411546
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411546 0.028±0.00 0.037±0.00 0.434±0.00 0.166±0.08 0.211±0.14 0.399±0.37 0.022±0.00 0.150±0.11 0.209±0.20 0.193±0.19 0.051±0.00 0.250±0.27 0.098±0.05 0.256±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032891 Smg1-001 protein_coding Mus_musculus 0 2909
ENSMUST00000180009 Smg1-003 retained_intron Mus_musculus 0 2067
ENSMUST00000179331 Smg1-005 protein_coding Mus_musculus 0 2034
ENSMUST00000179047 Smg1-002 protein_coding Mus_musculus 0 1415
ENSMUST00000179847 Smg1-004 retained_intron Mus_musculus 0 1206

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