C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032891 Smg1-001 ENSMUSG00000030655 10090 - 7:118131308-118243637 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032891 6.883±3.47 5.763±0.71 5.878±2.30 3.445±0.05 9.121±3.32 5.505±1.53 1.471±0.44 3.464±1.28 2.644±1.62 8.465±1.50 2.698±1.22 8.008±4.07 5.861±2.26 5.888±2.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0003 CGP 7:118118891-118243637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006950 IEA response to stress
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0044822 IEA poly(A) RNA binding
GO:0046777 IEA protein autophosphorylation
GO:0046854 IEA phosphatidylinositol phosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308347 SMG1P1-006 processed_transcript Homo_sapiens 0 933
ENST00000309865 SMG1P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 5216
ENST00000330588 SMG1-201 protein_coding Homo_sapiens 0 737
ENST00000337787 SMG1P1-002 processed_transcript Homo_sapiens 0 701
ENST00000380596 RP11-345J4.5-201 protein_coding Homo_sapiens 0 706
ENST00000380598 SMG1P4-005 processed_transcript Homo_sapiens 0 1173
ENST00000381231 SMG1P1-018 processed_transcript Homo_sapiens 0 1031
ENST00000381448 SMG1P4-004 processed_transcript Homo_sapiens 0 1147
ENST00000411546 SMG1P5-003 processed_transcript Homo_sapiens 0 2909
ENST00000415654 NPIPB5-016 processed_transcript Homo_sapiens 0 2296
ENST00000415833 NPIPB5-015 protein_coding Homo_sapiens 0 337
ENST00000418592 SMG1P1-004 processed_transcript Homo_sapiens 0 1203
ENST00000431681 SMG1P1-003 processed_transcript Homo_sapiens 0 2826
ENST00000437413 SMG1P3-006 processed_transcript Homo_sapiens 0 252
ENST00000440195 SMG1P3-004 processed_transcript Homo_sapiens 0 1203
ENST00000446231 SMG1-001 protein_coding Homo_sapiens 0 15630
ENST00000446662 SMG1P1-007 processed_transcript Homo_sapiens 0 460
ENST00000517529 SMG1P4-002 processed_transcript Homo_sapiens 0 701
ENST00000520823 SMG1P3-003 processed_transcript Homo_sapiens 0 3090
ENST00000522480 SMG1P3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 5070
ENST00000522841 SMG1P3-002 processed_transcript Homo_sapiens 0 1953
ENST00000523028 SMG1P4-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 5107
ENST00000529428 SMG1P5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 5295
ENST00000532337 SMG1P6-001 unprocessed_pseudogene Homo_sapiens 0 3548
ENST00000532700 SMG1-002 protein_coding Homo_sapiens 0 1476
ENST00000532983 SMG1P5-002 processed_transcript Homo_sapiens 0 857
ENST00000538859 NPIPB4-014 processed_transcript Homo_sapiens 0 337
ENST00000540706 SMG1P4-003 processed_transcript Homo_sapiens 0 1197
ENST00000544154 NPIPB3-004 processed_transcript Homo_sapiens 0 337
ENST00000551766 RRN3P3-001 processed_transcript Homo_sapiens 0 459
ENST00000561940 SMG1-016 retained_intron Homo_sapiens 0 588
ENST00000561947 SMG1-004 protein_coding Homo_sapiens 0 2132
ENST00000562668 SMG1-018 retained_intron Homo_sapiens 0 514
ENST00000563235 SMG1-006 protein_coding Homo_sapiens 0 3070
ENST00000563448 SMG1-012 retained_intron Homo_sapiens 0 2518
ENST00000563836 SMG1-015 protein_coding Homo_sapiens 0 248
ENST00000565224 SMG1-003 protein_coding Homo_sapiens 0 2660
ENST00000565246 SMG1P7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1482
ENST00000565324 SMG1-005 protein_coding Homo_sapiens 0 14670
ENST00000565417 RP11-345J4.5-002 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000566127 SMG1P2-001 unprocessed_pseudogene Homo_sapiens 0 5291
ENST00000566328 SMG1-017 protein_coding Homo_sapiens 0 222
ENST00000567737 SMG1-014 processed_transcript Homo_sapiens 3e-26 122
ENST00000568038 SMG1-009 nonsense_mediated_decay Homo_sapiens 0 1181
ENST00000568239 SMG1-007 retained_intron Homo_sapiens 0 496
ENST00000568556 RP11-345J4.5-001 nonsense_mediated_decay Homo_sapiens 0 852
ENST00000568855 SMG1P7-002 processed_transcript Homo_sapiens 0 307
ENST00000569122 SMG1-013 protein_coding Homo_sapiens 0 787
ENST00000569622 RP11-345J4.5-003 protein_coding Homo_sapiens 0 682
ENST00000573141 SMG1P7-003 processed_transcript Homo_sapiens 0 329
ENST00000581050 SMG1P7-006 processed_transcript Homo_sapiens 0 544

Loading