C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179331 Smg1-005 ENSMUSG00000030655 10090 - 7:118134047-118217830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeLiverPlacentaTestisENSMUST00000179331
Transcript ID Adipose Liver Placenta Testis
ENSMUST00000179331 1.357±0.00 0.469±0.00 4.837±0.00 3.508±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GM CIL_0007GM_0003 CGP 7:118118891-118243637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308347 SMG1P1-006 processed_transcript Homo_sapiens 0 1197
ENST00000309865 SMG1P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 4615
ENST00000330588 SMG1-201 protein_coding Homo_sapiens 0 1068
ENST00000337787 SMG1P1-002 processed_transcript Homo_sapiens 0 1009
ENST00000380596 RP11-345J4.5-201 protein_coding Homo_sapiens 0 706
ENST00000380598 SMG1P4-005 processed_transcript Homo_sapiens 0 1173
ENST00000381231 SMG1P1-018 processed_transcript Homo_sapiens 0 1031
ENST00000381448 SMG1P4-004 processed_transcript Homo_sapiens 0 1147
ENST00000411546 SMG1P5-003 processed_transcript Homo_sapiens 0 2034
ENST00000415654 NPIPB5-016 processed_transcript Homo_sapiens 0 2296
ENST00000415833 NPIPB5-015 protein_coding Homo_sapiens 0 337
ENST00000418592 SMG1P1-004 processed_transcript Homo_sapiens 0 1203
ENST00000431681 SMG1P1-003 processed_transcript Homo_sapiens 0 2826
ENST00000437413 SMG1P3-006 processed_transcript Homo_sapiens 0 305
ENST00000440195 SMG1P3-004 processed_transcript Homo_sapiens 0 1203
ENST00000446231 SMG1-001 protein_coding Homo_sapiens 0 14670
ENST00000446662 SMG1P1-007 processed_transcript Homo_sapiens 0 475
ENST00000517529 SMG1P4-002 processed_transcript Homo_sapiens 0 1009
ENST00000520823 SMG1P3-003 processed_transcript Homo_sapiens 0 3090
ENST00000522480 SMG1P3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 4518
ENST00000522841 SMG1P3-002 processed_transcript Homo_sapiens 0 2194
ENST00000523028 SMG1P4-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 4615
ENST00000529428 SMG1P5-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 4684
ENST00000532337 SMG1P6-001 unprocessed_pseudogene Homo_sapiens 0 3548
ENST00000532700 SMG1-002 protein_coding Homo_sapiens 0 948
ENST00000532983 SMG1P5-002 processed_transcript Homo_sapiens 0 857
ENST00000538859 NPIPB4-014 processed_transcript Homo_sapiens 0 337
ENST00000540706 SMG1P4-003 processed_transcript Homo_sapiens 0 1197
ENST00000544154 NPIPB3-004 processed_transcript Homo_sapiens 0 337
ENST00000561940 SMG1-016 retained_intron Homo_sapiens 0 588
ENST00000561947 SMG1-004 protein_coding Homo_sapiens 0 2385
ENST00000562668 SMG1-018 retained_intron Homo_sapiens 0 514
ENST00000563235 SMG1-006 protein_coding Homo_sapiens 0 3070
ENST00000563448 SMG1-012 retained_intron Homo_sapiens 0 2518
ENST00000563836 SMG1-015 protein_coding Homo_sapiens 0 346
ENST00000565224 SMG1-003 protein_coding Homo_sapiens 0 2132
ENST00000565246 SMG1P7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1482
ENST00000565324 SMG1-005 protein_coding Homo_sapiens 0 14800
ENST00000565417 RP11-345J4.5-002 nonsense_mediated_decay Homo_sapiens 0 854
ENST00000566127 SMG1P2-001 unprocessed_pseudogene Homo_sapiens 0 4680
ENST00000566328 SMG1-017 protein_coding Homo_sapiens 0 222
ENST00000568038 SMG1-009 nonsense_mediated_decay Homo_sapiens 0 1181
ENST00000568239 SMG1-007 retained_intron Homo_sapiens 0 496
ENST00000568556 RP11-345J4.5-001 nonsense_mediated_decay Homo_sapiens 0 852
ENST00000568855 SMG1P7-002 processed_transcript Homo_sapiens 0 307
ENST00000569122 SMG1-013 protein_coding Homo_sapiens 0 265
ENST00000569622 RP11-345J4.5-003 protein_coding Homo_sapiens 0 682
ENST00000573141 SMG1P7-003 processed_transcript Homo_sapiens 0 329
ENST00000581050 SMG1P7-006 processed_transcript Homo_sapiens 0 544

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