C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411638 NELFA-015 ENSG00000185049 9606 - 4:1982723-2008975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411638
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411638 11.356±0.00 13.801±0.00 0.487±0.00 3.349±3.05 7.647±0.00 3.672±2.48 1.948±0.00 6.210±0.00 1.627±0.56 4.753±4.15 11.457±0.00 19.745±3.12 13.362±2.87 17.228±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006V9 CIL_0006V9_0001 CGP 4:1871424-2041903
CIL_0006V6 CIL_0006V6_0001 CGP 4:1982714-2043970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006414 IEA translational elongation
GO:0007275 TAS multicellular organismal development
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032021 IEA:IDA NELF complex
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030993 Nelfa-001 protein_coding Mus_musculus 0 1620
ENSDART00000087568 nelfa-004 protein_coding Danio_rerio 0 274
ENSDART00000149184 nelfa-001 protein_coding Danio_rerio 0 274

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