C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412923 PCDH18-002 ENSG00000189184 9606 - 4:137519703-137532459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412923 10.028±0.00 1.178±0.00 2.043±0.00 0.813±0.19 6.239±0.74 5.969±1.03 1.042±0.26 0.822±0.14 5.757±5.63 2.587±0.30 0.671±0.57 3.145±1.56 6.522±2.04 1.750±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001R CIL_00001R_0001 CGP 4:137518918-138242349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 ISS brain development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035931 Pcdh18-201 protein_coding Mus_musculus 0 4318

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