C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 1 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413296 CBX1P3-001 ENSG00000237379 9606 + 1:203954640-203955780 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000413296
Transcript ID Brain Testis
ENST00000413296 0.124±0.00 0.158±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093943 Cbx1-001 protein_coding Mus_musculus 0 538
ENSMUST00000079702 Cbx1-002 protein_coding Mus_musculus 0 407
ENSMUST00000134585 Cbx1-003 nonsense_mediated_decay Mus_musculus 0 407
ENSMUST00000018810 Cbx1-005 protein_coding Mus_musculus 0 407

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